(13 nodes) Myelin sheath network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMP22	Peripheral myelin protein 22b. (157 aa)
	LOC109985248	Proteolipid protein 1b. (257 aa)
	prxl2b	Peroxiredoxin like 2B. (201 aa)
	LOC109982928	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2. (736 aa)
	ncmap	Uncharacterized protein. (149 aa)
	mbp	Myelin basic protein b. (148 aa)
	LOC109984383	Uncharacterized protein. (148 aa)
	mpz	Myelin protein zero. (228 aa)
	LOC109996460	Proteolipid protein 1a. (271 aa)
	pllp	Plasmolipin. (187 aa)
	LOC109990220	Myelin basic protein a. (204 aa)
	sirt2	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (383 aa)
	LOC109982952	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1. (722 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109984383	LOC109985248	ENSLBEP00000006821	ENSLBEP00000034712	Uncharacterized protein.	Proteolipid protein 1b.	0.542
LOC109984383	LOC109996460	ENSLBEP00000006821	ENSLBEP00000014657	Uncharacterized protein.	Proteolipid protein 1a.	0.542
LOC109985248	LOC109984383	ENSLBEP00000034712	ENSLBEP00000006821	Proteolipid protein 1b.	Uncharacterized protein.	0.542
LOC109985248	LOC109990220	ENSLBEP00000034712	ENSLBEP00000020526	Proteolipid protein 1b.	Myelin basic protein a.	0.624
LOC109985248	mbp	ENSLBEP00000034712	ENSLBEP00000006768	Proteolipid protein 1b.	Myelin basic protein b.	0.804
LOC109985248	mpz	ENSLBEP00000034712	ENSLBEP00000007999	Proteolipid protein 1b.	Myelin protein zero.	0.512
LOC109985248	pllp	ENSLBEP00000034712	ENSLBEP00000015188	Proteolipid protein 1b.	Plasmolipin.	0.404
LOC109990220	LOC109985248	ENSLBEP00000020526	ENSLBEP00000034712	Myelin basic protein a.	Proteolipid protein 1b.	0.624
LOC109990220	mbp	ENSLBEP00000020526	ENSLBEP00000006768	Myelin basic protein a.	Myelin basic protein b.	0.403
LOC109996460	LOC109984383	ENSLBEP00000014657	ENSLBEP00000006821	Proteolipid protein 1a.	Uncharacterized protein.	0.542
LOC109996460	mbp	ENSLBEP00000014657	ENSLBEP00000006768	Proteolipid protein 1a.	Myelin basic protein b.	0.804
LOC109996460	mpz	ENSLBEP00000014657	ENSLBEP00000007999	Proteolipid protein 1a.	Myelin protein zero.	0.490
LOC109996460	pllp	ENSLBEP00000014657	ENSLBEP00000015188	Proteolipid protein 1a.	Plasmolipin.	0.404
mbp	LOC109985248	ENSLBEP00000006768	ENSLBEP00000034712	Myelin basic protein b.	Proteolipid protein 1b.	0.804
mbp	LOC109990220	ENSLBEP00000006768	ENSLBEP00000020526	Myelin basic protein b.	Myelin basic protein a.	0.403
mbp	LOC109996460	ENSLBEP00000006768	ENSLBEP00000014657	Myelin basic protein b.	Proteolipid protein 1a.	0.804
mpz	LOC109985248	ENSLBEP00000007999	ENSLBEP00000034712	Myelin protein zero.	Proteolipid protein 1b.	0.512
mpz	LOC109996460	ENSLBEP00000007999	ENSLBEP00000014657	Myelin protein zero.	Proteolipid protein 1a.	0.490
pllp	LOC109985248	ENSLBEP00000015188	ENSLBEP00000034712	Plasmolipin.	Proteolipid protein 1b.	0.404
pllp	LOC109996460	ENSLBEP00000015188	ENSLBEP00000014657	Plasmolipin.	Proteolipid protein 1a.	0.404