17 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109985095	Laminin, beta 2-like. (1791 aa)
	ntng1	Netrin g1a. (546 aa)
	lamb3	Uncharacterized protein. (1157 aa)
	lamb2	Laminin, beta 2 (laminin S). (1785 aa)
	PMP22	Peripheral myelin protein 22b. (157 aa)
	cunh11orf53	Si:ch211-213d14.1. (281 aa)
	LOC109996378	Uncharacterized protein. (557 aa)
	ntn4	Netrin 4. (626 aa)
	ENSLBEP00000013996	Laminin, alpha 3. (1664 aa)
	LOC110004195	Uncharacterized protein. (638 aa)
	lama4	Laminin, alpha 4. (1806 aa)
	LAMB1	Laminin, beta 1a. (1791 aa)
	LAMA2	Laminin subunit alpha 2. (3039 aa)
	LOC109975356	Vav 3 guanine nucleotide exchange factor b. (456 aa)
	LOC109983928	Uncharacterized protein. (658 aa)
	ENSLBEP00000024666	Si:ch211-241e1.3. (1126 aa)
	ENSLBEP00000024743	Uncharacterized protein. (525 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000013996	ENSLBEP00000024743	ENSLBEP00000013996	ENSLBEP00000024743	Laminin, alpha 3.	Uncharacterized protein.	0.698
ENSLBEP00000013996	LAMA2	ENSLBEP00000013996	ENSLBEP00000017057	Laminin, alpha 3.	Laminin subunit alpha 2.	0.686
ENSLBEP00000013996	LAMB1	ENSLBEP00000013996	ENSLBEP00000015618	Laminin, alpha 3.	Laminin, beta 1a.	0.908
ENSLBEP00000013996	LOC109983928	ENSLBEP00000013996	ENSLBEP00000020613	Laminin, alpha 3.	Uncharacterized protein.	0.439
ENSLBEP00000013996	LOC109985095	ENSLBEP00000013996	ENSLBEP00000026840	Laminin, alpha 3.	Laminin, beta 2-like.	0.869
ENSLBEP00000013996	LOC109996378	ENSLBEP00000013996	ENSLBEP00000007734	Laminin, alpha 3.	Uncharacterized protein.	0.656
ENSLBEP00000013996	LOC110004195	ENSLBEP00000013996	ENSLBEP00000014479	Laminin, alpha 3.	Uncharacterized protein.	0.414
ENSLBEP00000013996	lamb2	ENSLBEP00000013996	ENSLBEP00000026645	Laminin, alpha 3.	Laminin, beta 2 (laminin S).	0.908
ENSLBEP00000013996	lamb3	ENSLBEP00000013996	ENSLBEP00000026141	Laminin, alpha 3.	Uncharacterized protein.	0.942
ENSLBEP00000013996	ntn4	ENSLBEP00000013996	ENSLBEP00000011387	Laminin, alpha 3.	Netrin 4.	0.414
ENSLBEP00000024666	ENSLBEP00000024743	ENSLBEP00000024666	ENSLBEP00000024743	Si:ch211-241e1.3.	Uncharacterized protein.	0.864
ENSLBEP00000024666	LAMA2	ENSLBEP00000024666	ENSLBEP00000017057	Si:ch211-241e1.3.	Laminin subunit alpha 2.	0.686
ENSLBEP00000024666	LAMB1	ENSLBEP00000024666	ENSLBEP00000015618	Si:ch211-241e1.3.	Laminin, beta 1a.	0.908
ENSLBEP00000024666	LOC109983928	ENSLBEP00000024666	ENSLBEP00000020613	Si:ch211-241e1.3.	Uncharacterized protein.	0.503
ENSLBEP00000024666	LOC109985095	ENSLBEP00000024666	ENSLBEP00000026840	Si:ch211-241e1.3.	Laminin, beta 2-like.	0.869
ENSLBEP00000024666	LOC109996378	ENSLBEP00000024666	ENSLBEP00000007734	Si:ch211-241e1.3.	Uncharacterized protein.	0.617
ENSLBEP00000024666	LOC110004195	ENSLBEP00000024666	ENSLBEP00000014479	Si:ch211-241e1.3.	Uncharacterized protein.	0.516
ENSLBEP00000024666	lamb2	ENSLBEP00000024666	ENSLBEP00000026645	Si:ch211-241e1.3.	Laminin, beta 2 (laminin S).	0.908
ENSLBEP00000024666	lamb3	ENSLBEP00000024666	ENSLBEP00000026141	Si:ch211-241e1.3.	Uncharacterized protein.	0.942
ENSLBEP00000024666	ntn4	ENSLBEP00000024666	ENSLBEP00000011387	Si:ch211-241e1.3.	Netrin 4.	0.493