(77 nodes) Recycling endosome network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPDEF-2	SAM pointed domain containing ETS transcription factor. (327 aa)
	stx8	Syntaxin 8. (237 aa)
	gpr161	G protein-coupled receptor 161. (536 aa)
	TBC1D12	TBC1 domain family member 12. (392 aa)
	LOC109984065	Peptidase_S9 domain-containing protein. (369 aa)
	TBC1D14	TBC1 domain family member 14. (308 aa)
	cftr	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer. (1509 aa)
	LOC109975529	GRIP1 associated protein 1. (932 aa)
	LOC109975538	Uncharacterized protein. (217 aa)
	LOC109992938	Zgc:153733. (248 aa)
	LOC109985428	EH-domain containing 1a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (532 aa)
	LOC109991069	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (543 aa)
	abhd17b	Abhydrolase domain containing 17B. (288 aa)
	LOC110002818	Uncharacterized protein. (634 aa)
	ENSLBEP00000007763	Uncharacterized protein. (200 aa)
	LOC109998604	RAB11B, member RAS oncogene family, a. (252 aa)
	LOC110006059	Syntaxin 8. (244 aa)
	ENSLBEP00000008759	FIP-RBD domain-containing protein. (94 aa)
	relch	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing. (1190 aa)
	LOC109985432	RAP2C, member of RAS oncogene family. (183 aa)
	ENSLBEP00000011587	C2 domain-containing protein. (160 aa)
	SPDEF	SAM pointed domain containing ETS transcription factor. (326 aa)
	LOC109990068	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (534 aa)
	ENSLBEP00000012752	Helicase ATP-binding domain-containing protein. (251 aa)
	LOC109991850	Mical-like 2b. (931 aa)
	LOC109992375	ATP-binding cassette, sub-family C (CFTR/MRP), member 4. (1204 aa)
	LOC109975771	Uncharacterized protein. (898 aa)
	LOC109980395	Secretory carrier-associated membrane protein. (207 aa)
	bace1	Beta-secretase 1; Belongs to the peptidase A1 family. (529 aa)
	ENSLBEP00000016121	QLQ domain-containing protein. (276 aa)
	lztr1	Leucine-zipper-like transcription regulator 1. (783 aa)
	LOC109995968	Si:dkey-98f17.5. (448 aa)
	SCAMP1	Secretory carrier-associated membrane protein. (346 aa)
	ENSLBEP00000018473	Uncharacterized protein. (239 aa)
	LOC109990196	RAP2A, member of RAS oncogene family b. (183 aa)
	LOC109992000	Uncharacterized protein. (218 aa)
	ENSLBEP00000020230	ABC transporter domain-containing protein. (127 aa)
	LOC109996579	Uncharacterized protein. (1218 aa)
	zdhhc2	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (367 aa)
	LOC109992034	RAB11a, member RAS oncogene family, like. (216 aa)
	ENSLBEP00000022376	Helicase ATP-binding domain-containing protein. (181 aa)
	pheta1	Si:ch211-193c2.2. (272 aa)
	avl9	AVL9 homolog (S. cerevisiase). (603 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1551 aa)
	LOC110003840	FIP-RBD domain-containing protein. (1031 aa)
	ENSLBEP00000022956	C2 domain-containing protein. (172 aa)
	abhd17c	Abhydrolase domain containing 17C. (294 aa)
	LOC109986857	Secretory carrier-associated membrane protein. (323 aa)
	EHD2	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (552 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (183 aa)
	LOC110005226	Secretory carrier-associated membrane protein. (327 aa)
	LOC109982756	Abhydrolase domain containing 17A. (321 aa)
	ABCC4	Uncharacterized protein. (1308 aa)
	washc1	WAS protein family homolog 1. (475 aa)
	LOC109999574	EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)
	ENSLBEP00000026618	Rab-GAP TBC domain-containing protein. (353 aa)
	LOC109994357	Uncharacterized protein. (1425 aa)
	arfgap3	ADP-ribosylation factor GTPase activating protein 3. (510 aa)
	vipas39	Uncharacterized protein. (354 aa)
	dennd6a	DENN/MADD domain containing 6Aa. (605 aa)
	RAP2B	RAP2B, member of RAS oncogene family. (183 aa)
	micall2	Mical-like 2a. (778 aa)
	vps50	VPS50 EARP/GARPII complex subunit. (969 aa)
	baiap3	BAI1-associated protein 3. (1128 aa)
	stx12	Syntaxin 12; Belongs to the syntaxin family. (295 aa)
	LOC109982969	Syntaxin 7-like; Belongs to the syntaxin family. (249 aa)
	LOC109981198	Uncharacterized protein. (506 aa)
	unc13d	Unc-13 homolog D (C. elegans). (1093 aa)
	atp13a3	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1274 aa)
	ENSLBEP00000032975	Si:ch211-11k18.4. (443 aa)
	LOC110003475	Syntaxin 12, like; Belongs to the syntaxin family. (268 aa)
	LAMP5	Lysosomal associated membrane protein family member 5. (314 aa)
	ENSLBEP00000034987	C2 domain-containing protein. (144 aa)
	micall1	MICAL-like 1a. (883 aa)
	LOC110001413	RAB11a, member RAS oncogene family. (215 aa)
	ENSLBEP00000036592	VHS domain-containing protein. (117 aa)
	NSG1	Neuronal vesicle trafficking associated 1. (185 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCC4	ENSLBEP00000020230	ENSLBEP00000025879	ENSLBEP00000020230	Uncharacterized protein.	ABC transporter domain-containing protein.	0.825
ABCC4	LOC109992375	ENSLBEP00000025879	ENSLBEP00000013640	Uncharacterized protein.	ATP-binding cassette, sub-family C (CFTR/MRP), member 4.	0.826
ABCC4	LOC109996579	ENSLBEP00000025879	ENSLBEP00000020690	Uncharacterized protein.	Uncharacterized protein.	0.826
EHD2	ENSLBEP00000008759	ENSLBEP00000023926	ENSLBEP00000008759	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	FIP-RBD domain-containing protein.	0.510
EHD2	ENSLBEP00000011587	ENSLBEP00000023926	ENSLBEP00000011587	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	C2 domain-containing protein.	0.510
EHD2	ENSLBEP00000022956	ENSLBEP00000023926	ENSLBEP00000022956	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	C2 domain-containing protein.	0.510
EHD2	ENSLBEP00000034987	ENSLBEP00000023926	ENSLBEP00000034987	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	C2 domain-containing protein.	0.510
EHD2	LOC110003840	ENSLBEP00000023926	ENSLBEP00000022924	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	FIP-RBD domain-containing protein.	0.510
ENSLBEP00000007763	ENSLBEP00000008759	ENSLBEP00000007763	ENSLBEP00000008759	Uncharacterized protein.	FIP-RBD domain-containing protein.	0.704
ENSLBEP00000007763	ENSLBEP00000011587	ENSLBEP00000007763	ENSLBEP00000011587	Uncharacterized protein.	C2 domain-containing protein.	0.777
ENSLBEP00000007763	ENSLBEP00000022956	ENSLBEP00000007763	ENSLBEP00000022956	Uncharacterized protein.	C2 domain-containing protein.	0.777
ENSLBEP00000007763	ENSLBEP00000026618	ENSLBEP00000007763	ENSLBEP00000026618	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.633
ENSLBEP00000007763	ENSLBEP00000034987	ENSLBEP00000007763	ENSLBEP00000034987	Uncharacterized protein.	C2 domain-containing protein.	0.728
ENSLBEP00000007763	LOC109992034	ENSLBEP00000007763	ENSLBEP00000021376	Uncharacterized protein.	RAB11a, member RAS oncogene family, like.	0.793
ENSLBEP00000007763	LOC110001413	ENSLBEP00000007763	ENSLBEP00000035810	Uncharacterized protein.	RAB11a, member RAS oncogene family.	0.811
ENSLBEP00000007763	LOC110003840	ENSLBEP00000007763	ENSLBEP00000022924	Uncharacterized protein.	FIP-RBD domain-containing protein.	0.777
ENSLBEP00000007763	TBC1D12	ENSLBEP00000007763	ENSLBEP00000002022	Uncharacterized protein.	TBC1 domain family member 12.	0.633
ENSLBEP00000007763	TBC1D14	ENSLBEP00000007763	ENSLBEP00000003147	Uncharacterized protein.	TBC1 domain family member 14.	0.633
ENSLBEP00000007763	arfgap3	ENSLBEP00000007763	ENSLBEP00000028534	Uncharacterized protein.	ADP-ribosylation factor GTPase activating protein 3.	0.482
ENSLBEP00000008759	EHD2	ENSLBEP00000008759	ENSLBEP00000023926	FIP-RBD domain-containing protein.	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.510