(7 nodes) Cone photoreceptor outer segment network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109996749	Uncharacterized protein. (191 aa)
	guca1b	Guanylate cyclase activator 1B. (197 aa)
	LOC109987848	Solute carrier family 24 member 3; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (658 aa)
	LOC109979167	Solute carrier family 24 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (536 aa)
	LOC109994344	Uncharacterized protein. (194 aa)
	LOC109996748	Guanylate cyclase activator 1g. (187 aa)
	LOC109996789	Solute carrier family 24 member 3; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (647 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109994344	guca1b	ENSLBEP00000025640	ENSLBEP00000010844	Uncharacterized protein.	Guanylate cyclase activator 1B.	0.853
LOC109996748	guca1b	ENSLBEP00000033753	ENSLBEP00000010844	Guanylate cyclase activator 1g.	Guanylate cyclase activator 1B.	0.727
LOC109996749	guca1b	ENSLBEP00000033774	ENSLBEP00000010844	Uncharacterized protein.	Guanylate cyclase activator 1B.	0.830
guca1b	LOC109994344	ENSLBEP00000010844	ENSLBEP00000025640	Guanylate cyclase activator 1B.	Uncharacterized protein.	0.853
guca1b	LOC109996748	ENSLBEP00000010844	ENSLBEP00000033753	Guanylate cyclase activator 1B.	Guanylate cyclase activator 1g.	0.727
guca1b	LOC109996749	ENSLBEP00000010844	ENSLBEP00000033774	Guanylate cyclase activator 1B.	Uncharacterized protein.	0.830