(108 nodes) Helicase, C-terminal network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (869 aa)
	dhx58	DEXH (Asp-Glu-X-His) box polypeptide 58. (679 aa)
	ENSLBEP00000005682	Uncharacterized protein. (1420 aa)
	ddx42	DEAD (Asp-Glu-Ala-Asp) box helicase 42. (866 aa)
	fancm	Uncharacterized protein. (1810 aa)
	shprh	SNF2 histone linker PHD RING helicase. (1523 aa)
	ifih1	Interferon induced with helicase C domain 1. (990 aa)
	dhx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33. (681 aa)
	ddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (562 aa)
	dhx35	DEAH-box helicase 35. (696 aa)
	ENSLBEP00000008890	Helicase for meiosis 1. (1073 aa)
	LOC109987825	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family. (693 aa)
	smarcad1	Uncharacterized protein. (1058 aa)
	ddx31	RNA helicase. (745 aa)
	LOC109993547	Uncharacterized protein. (1255 aa)
	LOC109996838	Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family. (412 aa)
	ddx1	DEAD (Asp-Glu-Ala-Asp) box helicase 1. (648 aa)
	dicer1	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1910 aa)
	ep400	E1A binding protein p400. (2973 aa)
	ENSLBEP00000012292	Uncharacterized protein. (619 aa)
	LOC110001643	Activating signal cointegrator 1 complex subunit 3. (1848 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (635 aa)
	LOC109997000	Zgc:193690. (487 aa)
	chd2	Chromodomain helicase DNA binding protein 2. (1732 aa)
	supv3l1	SUV3-like helicase. (786 aa)
	dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1098 aa)
	ddx51	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family. (658 aa)
	LOC110000867	Uncharacterized protein. (427 aa)
	btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated. (1854 aa)
	ddx56	DEAD (Asp-Glu-Ala-Asp) box helicase 56. (559 aa)
	dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1237 aa)
	ENSLBEP00000000113	Excision repair cross-complementation group 6-like. (1000 aa)
	LOC109976680	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (489 aa)
	ercc3	Excision repair cross-complementation group 3. (782 aa)
	ddx21	DEAD (Asp-Glu-Ala-Asp) box helicase 21. (760 aa)
	LOC109996290	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. (483 aa)
	DDX39A	DExD-box helicase 39A. (451 aa)
	ercc6l2	Excision repair cross-complementation group 6-like 2. (1581 aa)
	rad54b	RAD54 homolog B. (875 aa)
	ercc6	Excision repair cross-complementation group 6. (1440 aa)
	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (985 aa)
	CHD4	Uncharacterized protein. (1996 aa)
	ddx3x	DEAD-box helicase 3 X-linked a; Belongs to the DEAD box helicase family. (598 aa)
	LOC109993619	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (435 aa)
	LOC109992398	DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1186 aa)
	chd9	Chromodomain helicase DNA binding protein 9. (2810 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1551 aa)
	ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6. (476 aa)
	smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1034 aa)
	dhx34	DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1103 aa)
	dhx40	DEAH (Asp-Glu-Ala-His) box polypeptide 40. (731 aa)
	blm	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (846 aa)
	LOC109990300	RAD54 like 2. (1515 aa)
	LOC109995527	Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family. (404 aa)
	LOC109986347	Helicase, POLQ like. (964 aa)
	recql5	RecQ helicase-like 5. (430 aa)
	ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (777 aa)
	LOC110001857	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (954 aa)
	LOC109980699	Chromodomain helicase DNA binding protein 3. (1861 aa)
	ddx47	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (546 aa)
	dhx57	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57. (1397 aa)
	hltf	Helicase-like transcription factor. (938 aa)
	DDX41	DEAD-box helicase 41. (614 aa)
	YTHDC2	YTH domain containing 2. (1735 aa)
	zranb3	Zinc finger, RAN-binding domain containing 3. (1192 aa)
	ddx49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (479 aa)
	hells	Helicase, lymphoid specific. (854 aa)
	ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1061 aa)
	LOC109983461	RNA helicase. (651 aa)
	LOC109983388	Uncharacterized protein. (1499 aa)
	LOC109998454	Uncharacterized protein; Belongs to the DEAD box helicase family. (645 aa)
	mtrex	Mtr4 exosome RNA helicase. (1037 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (800 aa)
	ddx4	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family. (640 aa)
	ddx54	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (851 aa)
	dhx29	DEAH (Asp-Glu-Ala-His) box polypeptide 29. (1108 aa)
	LOC109981600	DEAH (Asp-Glu-Ala-His) box helicase 15. (747 aa)
	LOC109994357	Uncharacterized protein. (1425 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (404 aa)
	chd7	Chromodomain helicase DNA binding protein 7. (3294 aa)
	ddx24	DEAD (Asp-Glu-Ala-Asp) box helicase 24. (914 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
	ddx55	RNA helicase. (600 aa)
	ENSLBEP00000028861	Uncharacterized protein. (731 aa)
	DHX15	DEAH-box helicase 15. (722 aa)
	atrx	ATRX chromatin remodeler. (2243 aa)
	ddx59	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59. (579 aa)
	tdrd9	Tudor domain containing 9. (1320 aa)
	ddx27	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family. (727 aa)
	LOC110001279	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (598 aa)
	LOC109992399	DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1205 aa)
	LOC109975320	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (766 aa)
	DDX18	RNA helicase. (645 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1065 aa)
	recql	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (842 aa)
	chd1l	Chromodomain helicase DNA binding protein 1-like. (1028 aa)
	ino80	INO80 complex ATPase subunit. (1497 aa)
	chd1	Chromodomain helicase DNA binding protein 1. (1741 aa)
	LOC109992062	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1041 aa)
	LOC109990211	Uncharacterized protein; Belongs to the DEAD box helicase family. (496 aa)
	dhx30	DEAH (Asp-Glu-Ala-His) box helicase 30. (1176 aa)
	LOC109996557	Uncharacterized protein; Belongs to the DEAD box helicase family. (738 aa)
	ENSLBEP00000020673	RecQ helicase-like 4. (781 aa)
	ddx10	RNA helicase. (805 aa)
	ENSLBEP00000020198	Helicase C-terminal domain-containing protein. (229 aa)
	ddx52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (672 aa)
	ttf2	Transcription termination factor, RNA polymerase II. (1095 aa)
	rad54l	RAD54 like. (744 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHD4	DDX18	ENSLBEP00000016052	ENSLBEP00000030601	Uncharacterized protein.	RNA helicase.	0.412
CHD4	DDX39A	ENSLBEP00000016052	ENSLBEP00000003671	Uncharacterized protein.	DExD-box helicase 39A.	0.404
CHD4	DDX5	ENSLBEP00000016052	ENSLBEP00000013902	Uncharacterized protein.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.427
CHD4	ENSLBEP00000020673	ENSLBEP00000016052	ENSLBEP00000020673	Uncharacterized protein.	RecQ helicase-like 4.	0.465
CHD4	LOC109980699	ENSLBEP00000016052	ENSLBEP00000038221	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.566
CHD4	LOC109983388	ENSLBEP00000016052	ENSLBEP00000035617	Uncharacterized protein.	Uncharacterized protein.	0.564
CHD4	LOC109983461	ENSLBEP00000016052	ENSLBEP00000036384	Uncharacterized protein.	RNA helicase.	0.412
CHD4	LOC109987825	ENSLBEP00000016052	ENSLBEP00000010363	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.	0.404
CHD4	LOC109990211	ENSLBEP00000016052	ENSLBEP00000022019	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.408
CHD4	LOC109993619	ENSLBEP00000016052	ENSLBEP00000015818	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B.	0.404
CHD4	LOC109994357	ENSLBEP00000016052	ENSLBEP00000027298	Uncharacterized protein.	Uncharacterized protein.	0.465
CHD4	LOC109995527	ENSLBEP00000016052	ENSLBEP00000024854	Uncharacterized protein.	Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family.	0.411
CHD4	LOC109996290	ENSLBEP00000016052	ENSLBEP00000002247	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.408
CHD4	LOC109996557	ENSLBEP00000016052	ENSLBEP00000020899	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.404
CHD4	LOC109996838	ENSLBEP00000016052	ENSLBEP00000011233	Uncharacterized protein.	Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family.	0.411
CHD4	LOC109998454	ENSLBEP00000016052	ENSLBEP00000035510	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.427
CHD4	LOC110000867	ENSLBEP00000016052	ENSLBEP00000034036	Uncharacterized protein.	Uncharacterized protein.	0.404
CHD4	LOC110001279	ENSLBEP00000016052	ENSLBEP00000030356	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	0.427
CHD4	blm	ENSLBEP00000016052	ENSLBEP00000024461	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.432
CHD4	btaf1	ENSLBEP00000016052	ENSLBEP00000034747	Uncharacterized protein.	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.	0.445