(42 nodes) Four-helical cytokine-like, core network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000037844	Uncharacterized protein. (193 aa)
	LOC109994139	Ciliary neurotrophic factor. (204 aa)
	LOC109997543	Prolactin. (212 aa)
	epo	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family. (185 aa)
	LOC109980994	Colony stimulating factor 1b (macrophage). (271 aa)
	ENSLBEP00000012477	Uncharacterized protein. (203 aa)
	LOC110004513	Uncharacterized protein. (192 aa)
	LOC109976957	Uncharacterized protein. (217 aa)
	clcf1	Cardiotrophin-like cytokine factor 1. (502 aa)
	LOC109995365	Somatolactin alpha. (231 aa)
	il10	Interleukin 10. (187 aa)
	LOC109993083	Uncharacterized protein. (228 aa)
	LOC109998146	Uncharacterized protein. (161 aa)
	LOC109984227	Interleukin 19 like. (162 aa)
	ENSLBEP00000017272	Uncharacterized protein. (189 aa)
	LOC114917777	Uncharacterized protein. (182 aa)
	LOC109997858	Uncharacterized protein. (158 aa)
	LOC109993697	Interleukin 11a. (200 aa)
	LOC114921168	Uncharacterized protein. (191 aa)
	LOC109985487	Uncharacterized protein. (200 aa)
	ENSLBEP00000022120	Uncharacterized protein. (189 aa)
	LOC110001828	IL-6 subfamily cytokine M17. (253 aa)
	LOC109980076	Uncharacterized protein. (228 aa)
	LOC109985710	Interleukin-12 subunit alpha; Belongs to the IL-6 superfamily. (207 aa)
	LOC110002688	Interleukin; Belongs to the IL-15/IL-21 family. (128 aa)
	LOC109982488	Uncharacterized protein. (223 aa)
	LOC109989299	Uncharacterized protein. (211 aa)
	LOC109989324	Uncharacterized protein. (192 aa)
	ENSLBEP00000035127	Uncharacterized protein. (166 aa)
	ENSLBEP00000035151	Uncharacterized protein. (184 aa)
	LOC109989318	Growth hormone 1. (190 aa)
	ENSLBEP00000037660	Uncharacterized protein. (194 aa)
	LOC109981815	Uncharacterized protein. (184 aa)
	ENSLBEP00000010546	Uncharacterized protein. (190 aa)
	LOC109987610	Prolactin 2. (227 aa)
	ENSLBEP00000001818	Uncharacterized protein. (110 aa)
	ENSLBEP00000001834	Uncharacterized protein. (179 aa)
	LOC109991705	Uncharacterized protein. (253 aa)
	kitlg	Kit ligand a. (269 aa)
	LOC109981448	Uncharacterized protein. (213 aa)
	LOC109977493	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family. (185 aa)
	ENSLBEP00000006950	Uncharacterized protein. (187 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000017272	ENSLBEP00000035127	ENSLBEP00000017272	ENSLBEP00000035127	Uncharacterized protein.	Uncharacterized protein.	0.777
ENSLBEP00000017272	ENSLBEP00000035151	ENSLBEP00000017272	ENSLBEP00000035151	Uncharacterized protein.	Uncharacterized protein.	0.873
ENSLBEP00000017272	ENSLBEP00000037844	ENSLBEP00000017272	ENSLBEP00000037844	Uncharacterized protein.	Uncharacterized protein.	0.773
ENSLBEP00000017272	LOC109981815	ENSLBEP00000017272	ENSLBEP00000037826	Uncharacterized protein.	Uncharacterized protein.	0.773
ENSLBEP00000017272	LOC109989324	ENSLBEP00000017272	ENSLBEP00000034821	Uncharacterized protein.	Uncharacterized protein.	0.777
ENSLBEP00000017272	il10	ENSLBEP00000017272	ENSLBEP00000016723	Uncharacterized protein.	Interleukin 10.	0.402
ENSLBEP00000022120	LOC109977493	ENSLBEP00000022120	ENSLBEP00000004669	Uncharacterized protein.	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family.	0.728
ENSLBEP00000022120	LOC109987610	ENSLBEP00000022120	ENSLBEP00000038383	Uncharacterized protein.	Prolactin 2.	0.831
ENSLBEP00000022120	LOC109993083	ENSLBEP00000022120	ENSLBEP00000016850	Uncharacterized protein.	Uncharacterized protein.	0.831
ENSLBEP00000022120	LOC109997543	ENSLBEP00000022120	ENSLBEP00000011138	Uncharacterized protein.	Prolactin.	0.831
ENSLBEP00000022120	LOC109998146	ENSLBEP00000022120	ENSLBEP00000016958	Uncharacterized protein.	Uncharacterized protein.	0.854
ENSLBEP00000022120	epo	ENSLBEP00000022120	ENSLBEP00000011149	Uncharacterized protein.	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family.	0.728
ENSLBEP00000022120	kitlg	ENSLBEP00000022120	ENSLBEP00000003395	Uncharacterized protein.	Kit ligand a.	0.561
ENSLBEP00000035127	ENSLBEP00000017272	ENSLBEP00000035127	ENSLBEP00000017272	Uncharacterized protein.	Uncharacterized protein.	0.777
ENSLBEP00000035127	ENSLBEP00000035151	ENSLBEP00000035127	ENSLBEP00000035151	Uncharacterized protein.	Uncharacterized protein.	0.876
ENSLBEP00000035127	ENSLBEP00000037844	ENSLBEP00000035127	ENSLBEP00000037844	Uncharacterized protein.	Uncharacterized protein.	0.816
ENSLBEP00000035127	LOC109981815	ENSLBEP00000035127	ENSLBEP00000037826	Uncharacterized protein.	Uncharacterized protein.	0.816
ENSLBEP00000035151	ENSLBEP00000017272	ENSLBEP00000035151	ENSLBEP00000017272	Uncharacterized protein.	Uncharacterized protein.	0.873
ENSLBEP00000035151	ENSLBEP00000035127	ENSLBEP00000035151	ENSLBEP00000035127	Uncharacterized protein.	Uncharacterized protein.	0.876
ENSLBEP00000035151	ENSLBEP00000037844	ENSLBEP00000035151	ENSLBEP00000037844	Uncharacterized protein.	Uncharacterized protein.	0.909