(16 nodes) EGF-like domain, extracellular network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (782 aa)
	ENSLBEP00000001163	Tenascin C. (1722 aa)
	ITGB1	Integrin beta; Belongs to the integrin beta chain family. (777 aa)
	ENSLBEP00000005028	EGF-like domain-containing protein. (413 aa)
	LOC109996880	Integrin beta; Belongs to the integrin beta chain family. (793 aa)
	LOC109981973	Integrin beta; Belongs to the integrin beta chain family. (798 aa)
	VWDE	Von Willebrand factor D and EGF domains. (925 aa)
	LOC109981040	Teneurin transmembrane protein 2. (2465 aa)
	LOC109981082	Teneurin transmembrane protein 1. (2704 aa)
	LOC109989134	Netrin g2a. (579 aa)
	itgbl1	Integrin, beta-like 1. (486 aa)
	itgb8	Integrin beta; Belongs to the integrin beta chain family. (801 aa)
	ENSLBEP00000035454	Uncharacterized protein. (176 aa)
	ENSLBEP00000035471	Uncharacterized protein. (178 aa)
	sned1	Sushi, nidogen and EGF-like domains 1. (1394 aa)
	LOC109979877	Uncharacterized protein. (773 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000001163	ENSLBEP00000035454	ENSLBEP00000001163	ENSLBEP00000035454	Tenascin C.	Uncharacterized protein.	0.710
ENSLBEP00000001163	ENSLBEP00000035471	ENSLBEP00000001163	ENSLBEP00000035471	Tenascin C.	Uncharacterized protein.	0.824
ENSLBEP00000001163	ITGB1	ENSLBEP00000001163	ENSLBEP00000001814	Tenascin C.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSLBEP00000001163	LOC109979877	ENSLBEP00000001163	ENSLBEP00000038856	Tenascin C.	Uncharacterized protein.	0.712
ENSLBEP00000001163	LOC109981973	ENSLBEP00000001163	ENSLBEP00000007535	Tenascin C.	Integrin beta; Belongs to the integrin beta chain family.	0.853
ENSLBEP00000001163	LOC109996880	ENSLBEP00000001163	ENSLBEP00000006841	Tenascin C.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSLBEP00000001163	itgb6	ENSLBEP00000001163	ENSLBEP00000034614	Tenascin C.	Integrin beta; Belongs to the integrin beta chain family.	0.853
ENSLBEP00000001163	itgb8	ENSLBEP00000001163	ENSLBEP00000032519	Tenascin C.	Integrin beta; Belongs to the integrin beta chain family.	0.853
ENSLBEP00000001163	itgbl1	ENSLBEP00000001163	ENSLBEP00000028773	Tenascin C.	Integrin, beta-like 1.	0.855
ENSLBEP00000035454	ENSLBEP00000001163	ENSLBEP00000035454	ENSLBEP00000001163	Uncharacterized protein.	Tenascin C.	0.710
ENSLBEP00000035454	ENSLBEP00000035471	ENSLBEP00000035454	ENSLBEP00000035471	Uncharacterized protein.	Uncharacterized protein.	0.716
ENSLBEP00000035454	ITGB1	ENSLBEP00000035454	ENSLBEP00000001814	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSLBEP00000035454	LOC109979877	ENSLBEP00000035454	ENSLBEP00000038856	Uncharacterized protein.	Uncharacterized protein.	0.712
ENSLBEP00000035454	LOC109981973	ENSLBEP00000035454	ENSLBEP00000007535	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSLBEP00000035454	LOC109996880	ENSLBEP00000035454	ENSLBEP00000006841	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSLBEP00000035454	itgb6	ENSLBEP00000035454	ENSLBEP00000034614	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSLBEP00000035454	itgb8	ENSLBEP00000035454	ENSLBEP00000032519	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSLBEP00000035454	itgbl1	ENSLBEP00000035454	ENSLBEP00000028773	Uncharacterized protein.	Integrin, beta-like 1.	0.852
ENSLBEP00000035471	ENSLBEP00000001163	ENSLBEP00000035471	ENSLBEP00000001163	Uncharacterized protein.	Tenascin C.	0.824
ENSLBEP00000035471	ENSLBEP00000035454	ENSLBEP00000035471	ENSLBEP00000035454	Uncharacterized protein.	Uncharacterized protein.	0.716