(11 nodes) Enhancer of polycomb-like, N-terminal network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109980600	Bromodomain and PHD finger containing, 3a. (1238 aa)
	jade3	Jade family PHD finger 3. (790 aa)
	brd1	Bromodomain containing 1a. (957 aa)
	LOC109979773	Uncharacterized protein. (868 aa)
	LOC109989883	Enhancer of polycomb homolog. (831 aa)
	brpf1	Uncharacterized protein. (1118 aa)
	ENSLBEP00000006788	Bromodomain containing 1b. (929 aa)
	jade1	Jade family PHD finger 1. (941 aa)
	LOC109992531	Enhancer of polycomb homolog. (856 aa)
	LOC109985581	Bromodomain and PHD finger containing, 3b. (1124 aa)
	LOC109979440	Uncharacterized protein. (1162 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000006788	LOC109980600	ENSLBEP00000006788	ENSLBEP00000031376	Bromodomain containing 1b.	Bromodomain and PHD finger containing, 3a.	0.682
ENSLBEP00000006788	LOC109985581	ENSLBEP00000006788	ENSLBEP00000018021	Bromodomain containing 1b.	Bromodomain and PHD finger containing, 3b.	0.679
LOC109979440	LOC109980600	ENSLBEP00000025866	ENSLBEP00000031376	Uncharacterized protein.	Bromodomain and PHD finger containing, 3a.	0.678
LOC109979440	LOC109985581	ENSLBEP00000025866	ENSLBEP00000018021	Uncharacterized protein.	Bromodomain and PHD finger containing, 3b.	0.676
LOC109979773	LOC109980600	ENSLBEP00000038795	ENSLBEP00000031376	Uncharacterized protein.	Bromodomain and PHD finger containing, 3a.	0.673
LOC109979773	LOC109985581	ENSLBEP00000038795	ENSLBEP00000018021	Uncharacterized protein.	Bromodomain and PHD finger containing, 3b.	0.674
LOC109980600	ENSLBEP00000006788	ENSLBEP00000031376	ENSLBEP00000006788	Bromodomain and PHD finger containing, 3a.	Bromodomain containing 1b.	0.682
LOC109980600	LOC109979440	ENSLBEP00000031376	ENSLBEP00000025866	Bromodomain and PHD finger containing, 3a.	Uncharacterized protein.	0.678
LOC109980600	LOC109979773	ENSLBEP00000031376	ENSLBEP00000038795	Bromodomain and PHD finger containing, 3a.	Uncharacterized protein.	0.673
LOC109980600	brd1	ENSLBEP00000031376	ENSLBEP00000038192	Bromodomain and PHD finger containing, 3a.	Bromodomain containing 1a.	0.674
LOC109980600	brpf1	ENSLBEP00000031376	ENSLBEP00000007741	Bromodomain and PHD finger containing, 3a.	Uncharacterized protein.	0.674
LOC109985581	ENSLBEP00000006788	ENSLBEP00000018021	ENSLBEP00000006788	Bromodomain and PHD finger containing, 3b.	Bromodomain containing 1b.	0.679
LOC109985581	LOC109979440	ENSLBEP00000018021	ENSLBEP00000025866	Bromodomain and PHD finger containing, 3b.	Uncharacterized protein.	0.676
LOC109985581	LOC109979773	ENSLBEP00000018021	ENSLBEP00000038795	Bromodomain and PHD finger containing, 3b.	Uncharacterized protein.	0.674
LOC109985581	brd1	ENSLBEP00000018021	ENSLBEP00000038192	Bromodomain and PHD finger containing, 3b.	Bromodomain containing 1a.	0.673
LOC109985581	brpf1	ENSLBEP00000018021	ENSLBEP00000007741	Bromodomain and PHD finger containing, 3b.	Uncharacterized protein.	0.673
brd1	LOC109980600	ENSLBEP00000038192	ENSLBEP00000031376	Bromodomain containing 1a.	Bromodomain and PHD finger containing, 3a.	0.674
brd1	LOC109985581	ENSLBEP00000038192	ENSLBEP00000018021	Bromodomain containing 1a.	Bromodomain and PHD finger containing, 3b.	0.673
brpf1	LOC109980600	ENSLBEP00000007741	ENSLBEP00000031376	Uncharacterized protein.	Bromodomain and PHD finger containing, 3a.	0.674
brpf1	LOC109985581	ENSLBEP00000007741	ENSLBEP00000018021	Uncharacterized protein.	Bromodomain and PHD finger containing, 3b.	0.673