(59 nodes) Bromodomain-like superfamily network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109976681	Uncharacterized protein. (567 aa)
	LOC109999233	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (792 aa)
	ep300	E1A binding protein p300 a. (2577 aa)
	LOC109988835	Uncharacterized protein. (883 aa)
	kat2a	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (797 aa)
	LOC109981455	Bromodomain and WD repeat domain containing 3. (1665 aa)
	ENSLBEP00000006788	Bromodomain containing 1b. (929 aa)
	LOC109991783	Uncharacterized protein. (2256 aa)
	atad2	ATPase family AAA domain containing 2. (1497 aa)
	brpf1	Uncharacterized protein. (1118 aa)
	phip	Pleckstrin homology domain interacting protein. (1538 aa)
	brd3	Bromodomain containing 3b. (670 aa)
	LOC110001637	Si:dkey-226m8.10. (271 aa)
	LOC109988331	CECR2 histone acetyl-lysine reader. (1625 aa)
	LOC110004509	Bromo domain-containing protein. (249 aa)
	kmt2b	Lysine (K)-specific methyltransferase 2Bb. (2822 aa)
	LOC109991823	Uncharacterized protein. (1373 aa)
	BPTF	Bromodomain PHD finger transcription factor. (2912 aa)
	LOC109990107	Polybromo 1. (1566 aa)
	LOC109975844	Uncharacterized protein. (449 aa)
	trim33	Tripartite motif containing 33. (866 aa)
	LOC109985581	Bromodomain and PHD finger containing, 3b. (1124 aa)
	LOC109989542	CREB binding protein a. (2347 aa)
	LOC109983885	Zinc finger, MYND-type containing 8. (1242 aa)
	ENSLBEP00000022246	Bromo domain-containing protein. (265 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1551 aa)
	ENSLBEP00000024278	Bromo domain-containing protein. (226 aa)
	ENSLBEP00000024324	Bromodomain adjacent to zinc finger domain, 1A. (552 aa)
	LOC109989170	Protein kinase C binding protein 1, like. (1164 aa)
	ENSLBEP00000024751	Bromo domain-containing protein. (1691 aa)
	LOC109976431	Uncharacterized protein. (961 aa)
	baz2a	Bromodomain adjacent to zinc finger domain, 2A. (2491 aa)
	LOC109979440	Uncharacterized protein. (1162 aa)
	ENSLBEP00000025993	Uncharacterized protein. (343 aa)
	LOC109980589	Polybromo 1, like. (1614 aa)
	LOC109994357	Uncharacterized protein. (1425 aa)
	LOC110005259	Uncharacterized protein. (985 aa)
	LOC109989206	Bromodomain containing 4. (1511 aa)
	LOC109981656	Uncharacterized protein. (542 aa)
	LOC110001278	Bromodomain PHD finger transcription factor. (2516 aa)
	brd7	Bromodomain containing 7. (620 aa)
	LOC109980600	Bromodomain and PHD finger containing, 3a. (1238 aa)
	LOC110002718	Bromodomain containing 2. (835 aa)
	atad2b	ATPase family AAA domain containing 2B. (1290 aa)
	brd9	Bromodomain containing 9. (671 aa)
	LOC110001963	Tripartite motif containing 66. (1212 aa)
	LOC109985255	Transcription initiation factor TFIID subunit. (1920 aa)
	LOC109987008	Bromodomain adjacent to zinc finger domain, 2Ba. (2184 aa)
	LOC109988011	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (4178 aa)
	LOC109995669	Bromo domain-containing protein. (1225 aa)
	LOC109994130	CREB binding protein b. (2331 aa)
	LOC110004120	E1A binding protein p300 b. (2680 aa)
	LOC109988685	Ash1 (absent, small, or homeotic)-like (Drosophila). (2945 aa)
	baz1b	Bromodomain adjacent to zinc finger domain, 1B. (1593 aa)
	LOC109983330	Bromodomain, testis-specific. (1000 aa)
	LOC110002049	Zinc finger, MYND-type containing 11. (526 aa)
	LOC109988145	Uncharacterized protein. (1083 aa)
	brd1	Bromodomain containing 1a. (957 aa)
	LOC109979773	Uncharacterized protein. (868 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPTF	LOC109980589	ENSLBEP00000015589	ENSLBEP00000026361	Bromodomain PHD finger transcription factor.	Polybromo 1, like.	0.451
BPTF	LOC109988331	ENSLBEP00000015589	ENSLBEP00000012160	Bromodomain PHD finger transcription factor.	CECR2 histone acetyl-lysine reader.	0.692
BPTF	LOC109988685	ENSLBEP00000015589	ENSLBEP00000035794	Bromodomain PHD finger transcription factor.	Ash1 (absent, small, or homeotic)-like (Drosophila).	0.795
BPTF	LOC109989542	ENSLBEP00000015589	ENSLBEP00000018666	Bromodomain PHD finger transcription factor.	CREB binding protein a.	0.567
BPTF	LOC109990107	ENSLBEP00000015589	ENSLBEP00000016445	Bromodomain PHD finger transcription factor.	Polybromo 1.	0.451
BPTF	LOC109994130	ENSLBEP00000015589	ENSLBEP00000035655	Bromodomain PHD finger transcription factor.	CREB binding protein b.	0.567
BPTF	LOC109999233	ENSLBEP00000015589	ENSLBEP00000003190	Bromodomain PHD finger transcription factor.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.636
BPTF	LOC110004120	ENSLBEP00000015589	ENSLBEP00000035749	Bromodomain PHD finger transcription factor.	E1A binding protein p300 b.	0.679
BPTF	ep300	ENSLBEP00000015589	ENSLBEP00000003268	Bromodomain PHD finger transcription factor.	E1A binding protein p300 a.	0.679
BPTF	kat2a	ENSLBEP00000015589	ENSLBEP00000005448	Bromodomain PHD finger transcription factor.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.636
ENSLBEP00000006788	LOC109980600	ENSLBEP00000006788	ENSLBEP00000031376	Bromodomain containing 1b.	Bromodomain and PHD finger containing, 3a.	0.682
ENSLBEP00000006788	LOC109985581	ENSLBEP00000006788	ENSLBEP00000018021	Bromodomain containing 1b.	Bromodomain and PHD finger containing, 3b.	0.679
ENSLBEP00000006788	LOC109988685	ENSLBEP00000006788	ENSLBEP00000035794	Bromodomain containing 1b.	Ash1 (absent, small, or homeotic)-like (Drosophila).	0.442
ENSLBEP00000006788	brd7	ENSLBEP00000006788	ENSLBEP00000030880	Bromodomain containing 1b.	Bromodomain containing 7.	0.568
ENSLBEP00000006788	brd9	ENSLBEP00000006788	ENSLBEP00000033242	Bromodomain containing 1b.	Bromodomain containing 9.	0.602
ENSLBEP00000022246	LOC109980589	ENSLBEP00000022246	ENSLBEP00000026361	Bromo domain-containing protein.	Polybromo 1, like.	0.814
ENSLBEP00000022246	LOC109981455	ENSLBEP00000022246	ENSLBEP00000006099	Bromo domain-containing protein.	Bromodomain and WD repeat domain containing 3.	0.427
ENSLBEP00000022246	LOC109990107	ENSLBEP00000022246	ENSLBEP00000016445	Bromo domain-containing protein.	Polybromo 1.	0.814
ENSLBEP00000022246	brd7	ENSLBEP00000022246	ENSLBEP00000030880	Bromo domain-containing protein.	Bromodomain containing 7.	0.802
ENSLBEP00000022246	brd9	ENSLBEP00000022246	ENSLBEP00000033242	Bromo domain-containing protein.	Bromodomain containing 9.	0.802