(24 nodes) RUN domain superfamily network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109988595	Si:ch211-250n8.1. (417 aa)
	LOC109992898	RUN domain containing 3Aa. (411 aa)
	rundc1	RUN domain containing 1. (567 aa)
	rundc3b	RUN domain containing 3b. (449 aa)
	LOC109995875	Small G protein signaling modulator 1a. (1040 aa)
	sgsm2	Small G protein signaling modulator 2. (1068 aa)
	rufy2	RUN and FYVE domain containing 2. (702 aa)
	LOC109999927	Uncharacterized protein. (1262 aa)
	LOC109985027	FYVE and coiled-coil domain containing 1b. (1484 aa)
	RUSC2	RUN and SH3 domain containing 2. (919 aa)
	LOC109981170	Small G protein signaling modulator 1b. (1041 aa)
	sgsm3	Small G protein signaling modulator 3. (726 aa)
	rufy3	RUN and FYVE domain containing 3. (647 aa)
	LOC109994308	FYVE and coiled-coil domain containing 1a. (1519 aa)
	plekhm2	Pleckstrin homology domain containing, family M (with RUN domain) member 2. (1025 aa)
	LOC109988069	RUN domain containing 3Ab. (431 aa)
	ENSLBEP00000030919	RUN domain-containing protein. (107 aa)
	ENSLBEP00000033252	Uncharacterized protein. (136 aa)
	snx29	Sorting nexin 29. (835 aa)
	rusc1	RUN and SH3 domain containing 1. (1216 aa)
	dennd5a	DENN/MADD domain containing 5A. (1290 aa)
	rufy1	RUN and FYVE domain containing 1. (687 aa)
	LOC109984560	DENN/MADD domain containing 5B. (1328 aa)
	plekhm1	Pleckstrin homology domain containing, family M (with RUN domain) member 1. (1028 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000033252	LOC109988069	ENSLBEP00000033252	ENSLBEP00000028610	Uncharacterized protein.	RUN domain containing 3Ab.	0.500
ENSLBEP00000033252	LOC109992898	ENSLBEP00000033252	ENSLBEP00000005957	Uncharacterized protein.	RUN domain containing 3Aa.	0.500
ENSLBEP00000033252	plekhm1	ENSLBEP00000033252	ENSLBEP00000037837	Uncharacterized protein.	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	0.478
ENSLBEP00000033252	rufy2	ENSLBEP00000033252	ENSLBEP00000011219	Uncharacterized protein.	RUN and FYVE domain containing 2.	0.478
ENSLBEP00000033252	rufy3	ENSLBEP00000033252	ENSLBEP00000023752	Uncharacterized protein.	RUN and FYVE domain containing 3.	0.478
ENSLBEP00000033252	rundc3b	ENSLBEP00000033252	ENSLBEP00000008422	Uncharacterized protein.	RUN domain containing 3b.	0.500
ENSLBEP00000033252	snx29	ENSLBEP00000033252	ENSLBEP00000033941	Uncharacterized protein.	Sorting nexin 29.	0.478
LOC109981170	rundc1	ENSLBEP00000022849	ENSLBEP00000006109	Small G protein signaling modulator 1b.	RUN domain containing 1.	0.408
LOC109985027	LOC109994308	ENSLBEP00000021088	ENSLBEP00000024112	FYVE and coiled-coil domain containing 1b.	FYVE and coiled-coil domain containing 1a.	0.844
LOC109985027	plekhm1	ENSLBEP00000021088	ENSLBEP00000037837	FYVE and coiled-coil domain containing 1b.	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	0.434
LOC109988069	ENSLBEP00000033252	ENSLBEP00000028610	ENSLBEP00000033252	RUN domain containing 3Ab.	Uncharacterized protein.	0.500
LOC109988069	plekhm1	ENSLBEP00000028610	ENSLBEP00000037837	RUN domain containing 3Ab.	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	0.480
LOC109992898	ENSLBEP00000033252	ENSLBEP00000005957	ENSLBEP00000033252	RUN domain containing 3Aa.	Uncharacterized protein.	0.500
LOC109992898	plekhm1	ENSLBEP00000005957	ENSLBEP00000037837	RUN domain containing 3Aa.	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	0.480
LOC109994308	LOC109985027	ENSLBEP00000024112	ENSLBEP00000021088	FYVE and coiled-coil domain containing 1a.	FYVE and coiled-coil domain containing 1b.	0.844
LOC109994308	plekhm1	ENSLBEP00000024112	ENSLBEP00000037837	FYVE and coiled-coil domain containing 1a.	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	0.434
LOC109995875	rundc1	ENSLBEP00000009487	ENSLBEP00000006109	Small G protein signaling modulator 1a.	RUN domain containing 1.	0.408
plekhm1	ENSLBEP00000033252	ENSLBEP00000037837	ENSLBEP00000033252	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	Uncharacterized protein.	0.478
plekhm1	LOC109985027	ENSLBEP00000037837	ENSLBEP00000021088	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	FYVE and coiled-coil domain containing 1b.	0.434
plekhm1	LOC109988069	ENSLBEP00000037837	ENSLBEP00000028610	Pleckstrin homology domain containing, family M (with RUN domain) member 1.	RUN domain containing 3Ab.	0.480