(10 nodes) FIP-RBD, C-terminal domain superfamily network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110003840	FIP-RBD domain-containing protein. (1031 aa)
	erc1	ELKS/RAB6-interacting/CAST family member 1a. (1133 aa)
	rab11fip3	RAB11 family interacting protein 3 (class II). (1074 aa)
	ENSLBEP00000008759	FIP-RBD domain-containing protein. (94 aa)
	rab11fip2	RAB11 family interacting protein 2 (class I). (464 aa)
	LOC109993442	RAB11 family interacting protein 4 (class II) b. (607 aa)
	ENSLBEP00000027327	FIP-RBD domain-containing protein. (86 aa)
	LOC109997211	RAB11 family interacting protein 4 (class II) a. (604 aa)
	ENSLBEP00000011142	FIP-RBD domain-containing protein. (62 aa)
	LOC109998029	ELKS/RAB6-interacting/CAST family member 1. (1188 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000008759	ENSLBEP00000027327	ENSLBEP00000008759	ENSLBEP00000027327	FIP-RBD domain-containing protein.	FIP-RBD domain-containing protein.	0.636
ENSLBEP00000008759	rab11fip2	ENSLBEP00000008759	ENSLBEP00000031019	FIP-RBD domain-containing protein.	RAB11 family interacting protein 2 (class I).	0.636
ENSLBEP00000027327	ENSLBEP00000008759	ENSLBEP00000027327	ENSLBEP00000008759	FIP-RBD domain-containing protein.	FIP-RBD domain-containing protein.	0.636
ENSLBEP00000027327	LOC110003840	ENSLBEP00000027327	ENSLBEP00000022924	FIP-RBD domain-containing protein.	FIP-RBD domain-containing protein.	0.636
LOC110003840	ENSLBEP00000027327	ENSLBEP00000022924	ENSLBEP00000027327	FIP-RBD domain-containing protein.	FIP-RBD domain-containing protein.	0.636
LOC110003840	rab11fip2	ENSLBEP00000022924	ENSLBEP00000031019	FIP-RBD domain-containing protein.	RAB11 family interacting protein 2 (class I).	0.700
rab11fip2	ENSLBEP00000008759	ENSLBEP00000031019	ENSLBEP00000008759	RAB11 family interacting protein 2 (class I).	FIP-RBD domain-containing protein.	0.636
rab11fip2	LOC110003840	ENSLBEP00000031019	ENSLBEP00000022924	RAB11 family interacting protein 2 (class I).	FIP-RBD domain-containing protein.	0.700