(7 nodes) Transcription factor GATA network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GATA2	GATA binding protein 2. (451 aa)
	gata5	GATA binding protein 5. (372 aa)
	gata3	GATA binding protein 3. (439 aa)
	LOC109983926	GATA binding protein 1a. (421 aa)
	gata4	GATA binding protein 4. (400 aa)
	gata6	GATA binding protein 6. (524 aa)
	LOC109983387	GATA binding protein 2a. (457 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GATA2	LOC109983926	ENSLBEP00000023306	ENSLBEP00000023574	GATA binding protein 2.	GATA binding protein 1a.	0.648
GATA2	gata4	ENSLBEP00000023306	ENSLBEP00000015202	GATA binding protein 2.	GATA binding protein 4.	0.593
GATA2	gata5	ENSLBEP00000023306	ENSLBEP00000038839	GATA binding protein 2.	GATA binding protein 5.	0.607
GATA2	gata6	ENSLBEP00000023306	ENSLBEP00000023112	GATA binding protein 2.	GATA binding protein 6.	0.593
LOC109983387	LOC109983926	ENSLBEP00000035267	ENSLBEP00000023574	GATA binding protein 2a.	GATA binding protein 1a.	0.651
LOC109983387	gata4	ENSLBEP00000035267	ENSLBEP00000015202	GATA binding protein 2a.	GATA binding protein 4.	0.593
LOC109983387	gata5	ENSLBEP00000035267	ENSLBEP00000038839	GATA binding protein 2a.	GATA binding protein 5.	0.607
LOC109983387	gata6	ENSLBEP00000035267	ENSLBEP00000023112	GATA binding protein 2a.	GATA binding protein 6.	0.593
LOC109983926	GATA2	ENSLBEP00000023574	ENSLBEP00000023306	GATA binding protein 1a.	GATA binding protein 2.	0.648
LOC109983926	LOC109983387	ENSLBEP00000023574	ENSLBEP00000035267	GATA binding protein 1a.	GATA binding protein 2a.	0.651
LOC109983926	gata3	ENSLBEP00000023574	ENSLBEP00000030874	GATA binding protein 1a.	GATA binding protein 3.	0.643
gata3	LOC109983926	ENSLBEP00000030874	ENSLBEP00000023574	GATA binding protein 3.	GATA binding protein 1a.	0.643
gata3	gata4	ENSLBEP00000030874	ENSLBEP00000015202	GATA binding protein 3.	GATA binding protein 4.	0.593
gata3	gata5	ENSLBEP00000030874	ENSLBEP00000038839	GATA binding protein 3.	GATA binding protein 5.	0.593
gata3	gata6	ENSLBEP00000030874	ENSLBEP00000023112	GATA binding protein 3.	GATA binding protein 6.	0.593
gata4	GATA2	ENSLBEP00000015202	ENSLBEP00000023306	GATA binding protein 4.	GATA binding protein 2.	0.593
gata4	LOC109983387	ENSLBEP00000015202	ENSLBEP00000035267	GATA binding protein 4.	GATA binding protein 2a.	0.593
gata4	gata3	ENSLBEP00000015202	ENSLBEP00000030874	GATA binding protein 4.	GATA binding protein 3.	0.593
gata5	GATA2	ENSLBEP00000038839	ENSLBEP00000023306	GATA binding protein 5.	GATA binding protein 2.	0.607
gata5	LOC109983387	ENSLBEP00000038839	ENSLBEP00000035267	GATA binding protein 5.	GATA binding protein 2a.	0.607