(5 nodes) RNA-binding protein ZFP36-like network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109988487	Zgc:162730. (423 aa)
	LOC110003050	Sb:cb81. (408 aa)
	LOC109988479	Zgc:114130. (424 aa)
	LOC109995551	Cysteine three histidine 1. (316 aa)
	LOC109977822	Zinc finger protein 36, C3H type-like 1a. (376 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109977822	LOC109988479	ENSLBEP00000010481	ENSLBEP00000023984	Zinc finger protein 36, C3H type-like 1a.	Zgc:114130.	0.856
LOC109977822	LOC110003050	ENSLBEP00000010481	ENSLBEP00000023981	Zinc finger protein 36, C3H type-like 1a.	Sb:cb81.	0.856
LOC109988479	LOC109977822	ENSLBEP00000023984	ENSLBEP00000010481	Zgc:114130.	Zinc finger protein 36, C3H type-like 1a.	0.856
LOC109988479	LOC109988487	ENSLBEP00000023984	ENSLBEP00000023972	Zgc:114130.	Zgc:162730.	0.846
LOC109988479	LOC110003050	ENSLBEP00000023984	ENSLBEP00000023981	Zgc:114130.	Sb:cb81.	0.859
LOC109988487	LOC109988479	ENSLBEP00000023972	ENSLBEP00000023984	Zgc:162730.	Zgc:114130.	0.846
LOC110003050	LOC109977822	ENSLBEP00000023981	ENSLBEP00000010481	Sb:cb81.	Zinc finger protein 36, C3H type-like 1a.	0.856
LOC110003050	LOC109988479	ENSLBEP00000023981	ENSLBEP00000023984	Sb:cb81.	Zgc:114130.	0.859