38 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109980758	Netrin 5. (643 aa)
	lama1	Laminin, alpha 1. (2848 aa)
	ENSLBEP00000005998	Uncharacterized protein. (1385 aa)
	atrn	Attractin. (1368 aa)
	LOC109996378	Uncharacterized protein. (557 aa)
	LOC110002852	Netrin 1b. (600 aa)
	celsr3	Cadherin, EGF LAG seven-pass G-type receptor 3; Belongs to the G-protein coupled receptor 2 family. (3091 aa)
	ntn4	Netrin 4. (626 aa)
	ENSLBEP00000013996	Laminin, alpha 3. (1664 aa)
	lama4	Laminin, alpha 4. (1806 aa)
	LAMB1	Laminin, beta 1a. (1791 aa)
	LOC110001690	Uncharacterized protein. (1436 aa)
	LAMA2	Laminin subunit alpha 2. (3039 aa)
	LOC109986753	Netrin 2. (634 aa)
	celsr2	Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family. (3013 aa)
	LOC109985580	Agrin. (1838 aa)
	LOC109975356	Vav 3 guanine nucleotide exchange factor b. (456 aa)
	LOC109989134	Netrin g2a. (579 aa)
	LOC109983928	Uncharacterized protein. (658 aa)
	hspg2	Heparan sulfate proteoglycan 2. (3354 aa)
	LOC109999546	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. (592 aa)
	ENSLBEP00000024666	Si:ch211-241e1.3. (1126 aa)
	ENSLBEP00000024743	Uncharacterized protein. (525 aa)
	celsr1	Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family. (3018 aa)
	lamb3	Uncharacterized protein. (1157 aa)
	lamb2	Laminin, beta 2 (laminin S). (1785 aa)
	LOC109985095	Laminin, beta 2-like. (1791 aa)
	ENSLBEP00000029121	Uncharacterized protein. (540 aa)
	ENSLBEP00000031450	Attractin-like 1a. (1339 aa)
	LOC109984480	Netrin G2. (633 aa)
	LOC109980652	Multiple EGF-like-domains 6b. (1641 aa)
	ENSLBEP00000033158	Uncharacterized protein. (151 aa)
	ntng1	Netrin g1a. (546 aa)
	LOC110003525	Uncharacterized protein. (1126 aa)
	stab1	Stabilin 1. (2375 aa)
	LOC110001412	Uncharacterized protein. (942 aa)
	LOC110004195	Uncharacterized protein. (638 aa)
	LOC109992737	Si:dkey-220k22.1. (557 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000005998	ENSLBEP00000029121	ENSLBEP00000005998	ENSLBEP00000029121	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSLBEP00000005998	LAMB1	ENSLBEP00000005998	ENSLBEP00000015618	Uncharacterized protein.	Laminin, beta 1a.	0.849
ENSLBEP00000005998	LOC109983928	ENSLBEP00000005998	ENSLBEP00000020613	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSLBEP00000005998	LOC109985095	ENSLBEP00000005998	ENSLBEP00000026840	Uncharacterized protein.	Laminin, beta 2-like.	0.849
ENSLBEP00000005998	LOC109992737	ENSLBEP00000005998	ENSLBEP00000038529	Uncharacterized protein.	Si:dkey-220k22.1.	0.412
ENSLBEP00000005998	LOC110001412	ENSLBEP00000005998	ENSLBEP00000035796	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSLBEP00000005998	LOC110003525	ENSLBEP00000005998	ENSLBEP00000034705	Uncharacterized protein.	Uncharacterized protein.	0.876
ENSLBEP00000005998	LOC110004195	ENSLBEP00000005998	ENSLBEP00000014479	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSLBEP00000005998	lama1	ENSLBEP00000005998	ENSLBEP00000003930	Uncharacterized protein.	Laminin, alpha 1.	0.774
ENSLBEP00000005998	lamb2	ENSLBEP00000005998	ENSLBEP00000026645	Uncharacterized protein.	Laminin, beta 2 (laminin S).	0.849
ENSLBEP00000005998	lamb3	ENSLBEP00000005998	ENSLBEP00000026141	Uncharacterized protein.	Uncharacterized protein.	0.921
ENSLBEP00000005998	ntn4	ENSLBEP00000005998	ENSLBEP00000011387	Uncharacterized protein.	Netrin 4.	0.414
ENSLBEP00000013996	ENSLBEP00000024743	ENSLBEP00000013996	ENSLBEP00000024743	Laminin, alpha 3.	Uncharacterized protein.	0.698
ENSLBEP00000013996	ENSLBEP00000029121	ENSLBEP00000013996	ENSLBEP00000029121	Laminin, alpha 3.	Uncharacterized protein.	0.907
ENSLBEP00000013996	LAMA2	ENSLBEP00000013996	ENSLBEP00000017057	Laminin, alpha 3.	Laminin subunit alpha 2.	0.686
ENSLBEP00000013996	LAMB1	ENSLBEP00000013996	ENSLBEP00000015618	Laminin, alpha 3.	Laminin, beta 1a.	0.908
ENSLBEP00000013996	LOC109983928	ENSLBEP00000013996	ENSLBEP00000020613	Laminin, alpha 3.	Uncharacterized protein.	0.439
ENSLBEP00000013996	LOC109985095	ENSLBEP00000013996	ENSLBEP00000026840	Laminin, alpha 3.	Laminin, beta 2-like.	0.869
ENSLBEP00000013996	LOC109992737	ENSLBEP00000013996	ENSLBEP00000038529	Laminin, alpha 3.	Si:dkey-220k22.1.	0.412
ENSLBEP00000013996	LOC109996378	ENSLBEP00000013996	ENSLBEP00000007734	Laminin, alpha 3.	Uncharacterized protein.	0.656