(20 nodes) Apoptosis induced DNA fragmentation network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dffb	DNA fragmentation factor, beta polypeptide (caspase-activated DNase). (346 aa)
	LOC109984753	High mobility group box 1b. (204 aa)
	LOC109977454	DUF4203 domain-containing protein. (342 aa)
	hmgb1	High mobility group box 1a. (205 aa)
	hmgb2	High mobility group box 2a. (216 aa)
	ENSLBEP00000004713	Transmembrane protein 198a. (363 aa)
	LOC109977987	Uncharacterized protein. (251 aa)
	ENSLBEP00000013225	HMG box domain-containing protein. (72 aa)
	LOC109994773	Transmembrane protein 198b. (420 aa)
	LOC109986942	DUF4203 domain-containing protein. (333 aa)
	LOC109986783	H1 histone family, member 0. (199 aa)
	ENSLBEP00000021315	H15 domain-containing protein. (96 aa)
	LOC109994852	Si:ch211-103n10.5. (187 aa)
	LOC109992495	Transmembrane protein 198-like. (342 aa)
	ENSLBEP00000022806	HMG box domain-containing protein. (118 aa)
	LOC109992786	Importin subunit alpha; Belongs to the importin alpha family. (563 aa)
	ENSLBEP00000025505	H15 domain-containing protein. (181 aa)
	ENSLBEP00000026274	H15 domain-containing protein. (132 aa)
	ENSLBEP00000026702	H15 domain-containing protein. (125 aa)
	LOC109989313	Karyopherin (importin) beta 1. (892 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000004713	dffb	ENSLBEP00000004713	ENSLBEP00000025846	Transmembrane protein 198a.	DNA fragmentation factor, beta polypeptide (caspase-activated DNase).	0.537
ENSLBEP00000013225	ENSLBEP00000021315	ENSLBEP00000013225	ENSLBEP00000021315	HMG box domain-containing protein.	H15 domain-containing protein.	0.466
ENSLBEP00000013225	ENSLBEP00000025505	ENSLBEP00000013225	ENSLBEP00000025505	HMG box domain-containing protein.	H15 domain-containing protein.	0.466
ENSLBEP00000013225	ENSLBEP00000026274	ENSLBEP00000013225	ENSLBEP00000026274	HMG box domain-containing protein.	H15 domain-containing protein.	0.466
ENSLBEP00000013225	ENSLBEP00000026702	ENSLBEP00000013225	ENSLBEP00000026702	HMG box domain-containing protein.	H15 domain-containing protein.	0.466
ENSLBEP00000013225	LOC109986783	ENSLBEP00000013225	ENSLBEP00000020564	HMG box domain-containing protein.	H1 histone family, member 0.	0.633
ENSLBEP00000013225	LOC109994852	ENSLBEP00000013225	ENSLBEP00000021380	HMG box domain-containing protein.	Si:ch211-103n10.5.	0.466
ENSLBEP00000013225	dffb	ENSLBEP00000013225	ENSLBEP00000025846	HMG box domain-containing protein.	DNA fragmentation factor, beta polypeptide (caspase-activated DNase).	0.530
ENSLBEP00000021315	ENSLBEP00000013225	ENSLBEP00000021315	ENSLBEP00000013225	H15 domain-containing protein.	HMG box domain-containing protein.	0.466
ENSLBEP00000021315	ENSLBEP00000022806	ENSLBEP00000021315	ENSLBEP00000022806	H15 domain-containing protein.	HMG box domain-containing protein.	0.466
ENSLBEP00000021315	LOC109977987	ENSLBEP00000021315	ENSLBEP00000009053	H15 domain-containing protein.	Uncharacterized protein.	0.604
ENSLBEP00000021315	LOC109984753	ENSLBEP00000021315	ENSLBEP00000002242	H15 domain-containing protein.	High mobility group box 1b.	0.485
ENSLBEP00000021315	LOC109986783	ENSLBEP00000021315	ENSLBEP00000020564	H15 domain-containing protein.	H1 histone family, member 0.	0.567
ENSLBEP00000021315	LOC109989313	ENSLBEP00000021315	ENSLBEP00000034317	H15 domain-containing protein.	Karyopherin (importin) beta 1.	0.604
ENSLBEP00000021315	dffb	ENSLBEP00000021315	ENSLBEP00000025846	H15 domain-containing protein.	DNA fragmentation factor, beta polypeptide (caspase-activated DNase).	0.598
ENSLBEP00000021315	hmgb1	ENSLBEP00000021315	ENSLBEP00000003372	H15 domain-containing protein.	High mobility group box 1a.	0.485
ENSLBEP00000021315	hmgb2	ENSLBEP00000021315	ENSLBEP00000003805	H15 domain-containing protein.	High mobility group box 2a.	0.485
ENSLBEP00000022806	ENSLBEP00000021315	ENSLBEP00000022806	ENSLBEP00000021315	HMG box domain-containing protein.	H15 domain-containing protein.	0.466
ENSLBEP00000022806	ENSLBEP00000025505	ENSLBEP00000022806	ENSLBEP00000025505	HMG box domain-containing protein.	H15 domain-containing protein.	0.466
ENSLBEP00000022806	ENSLBEP00000026274	ENSLBEP00000022806	ENSLBEP00000026274	HMG box domain-containing protein.	H15 domain-containing protein.	0.466