(25 nodes) Acyl chain remodelling of PG network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109998586	Phospholipase A2, group XIIB. (183 aa)
	LOC109982044	Phospholipase A(2). (160 aa)
	LOC109982045	Phospholipase A(2). (147 aa)
	lpgat1	Lysophosphatidylglycerol acyltransferase 1. (372 aa)
	OC90	Otoconin 90. (334 aa)
	pla2g4a	Phospholipase A2. (749 aa)
	pla2r1	Phospholipase A2 receptor 1. (1483 aa)
	LOC109996763	PA2c domain-containing protein. (138 aa)
	LOC109999686	Bifunctional peptidase and (3S)-lysyl hydroxylase Jmjd7-like. (311 aa)
	LOC109990367	Phospholipase A(2). (154 aa)
	LPCAT1	Lysophosphatidylcholine acyltransferase 1. (603 aa)
	LOC109981683	Phospholipase A(2). (149 aa)
	LOC109983318	PA2c domain-containing protein. (712 aa)
	LOC110003094	Jumonji domain containing 7. (311 aa)
	PLA2G12A	Phospholipase A2 group XIIA. (193 aa)
	cnbp	Zgc:77375. (441 aa)
	hdhd5	Haloacid dehalogenase like hydrolase domain containing 5. (445 aa)
	LOC110004318	Lysophosphatidylcholine acyltransferase 4. (405 aa)
	crls1	Cardiolipin synthase 1. (186 aa)
	LOC110000139	Lysophosphatidylcholine acyltransferase 1. (500 aa)
	LOC109977256	PLA2c domain-containing protein. (624 aa)
	ENSLBEP00000017422	Uncharacterized protein. (115 aa)
	LOC109976280	Phospholipase A2, group XIIA. (193 aa)
	LOC109998188	Phospholipase A2 group III. (535 aa)
	ENSLBEP00000007790	Uncharacterized protein. (204 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000007790	crls1	ENSLBEP00000007790	ENSLBEP00000025206	Uncharacterized protein.	Cardiolipin synthase 1.	0.617
ENSLBEP00000007790	lpgat1	ENSLBEP00000007790	ENSLBEP00000012267	Uncharacterized protein.	Lysophosphatidylglycerol acyltransferase 1.	0.536
ENSLBEP00000017422	LOC109976280	ENSLBEP00000017422	ENSLBEP00000019197	Uncharacterized protein.	Phospholipase A2, group XIIA.	0.821
ENSLBEP00000017422	LOC109981683	ENSLBEP00000017422	ENSLBEP00000028695	Uncharacterized protein.	Phospholipase A(2).	0.821
ENSLBEP00000017422	LOC109982044	ENSLBEP00000017422	ENSLBEP00000011532	Uncharacterized protein.	Phospholipase A(2).	0.838
ENSLBEP00000017422	LOC109982045	ENSLBEP00000017422	ENSLBEP00000011556	Uncharacterized protein.	Phospholipase A(2).	0.821
ENSLBEP00000017422	LOC109990367	ENSLBEP00000017422	ENSLBEP00000031226	Uncharacterized protein.	Phospholipase A(2).	0.838
ENSLBEP00000017422	LOC109998586	ENSLBEP00000017422	ENSLBEP00000003536	Uncharacterized protein.	Phospholipase A2, group XIIB.	0.831
ENSLBEP00000017422	LOC110004318	ENSLBEP00000017422	ENSLBEP00000005910	Uncharacterized protein.	Lysophosphatidylcholine acyltransferase 4.	0.862
ENSLBEP00000017422	OC90	ENSLBEP00000017422	ENSLBEP00000037700	Uncharacterized protein.	Otoconin 90.	0.536
ENSLBEP00000017422	PLA2G12A	ENSLBEP00000017422	ENSLBEP00000020069	Uncharacterized protein.	Phospholipase A2 group XIIA.	0.821
ENSLBEP00000017422	crls1	ENSLBEP00000017422	ENSLBEP00000025206	Uncharacterized protein.	Cardiolipin synthase 1.	0.866
ENSLBEP00000017422	lpgat1	ENSLBEP00000017422	ENSLBEP00000012267	Uncharacterized protein.	Lysophosphatidylglycerol acyltransferase 1.	0.848
ENSLBEP00000017422	pla2g4a	ENSLBEP00000017422	ENSLBEP00000034933	Uncharacterized protein.	Phospholipase A2.	0.850
LOC109976280	ENSLBEP00000017422	ENSLBEP00000019197	ENSLBEP00000017422	Phospholipase A2, group XIIA.	Uncharacterized protein.	0.821
LOC109976280	LOC109981683	ENSLBEP00000019197	ENSLBEP00000028695	Phospholipase A2, group XIIA.	Phospholipase A(2).	0.850
LOC109976280	LOC109982045	ENSLBEP00000019197	ENSLBEP00000011556	Phospholipase A2, group XIIA.	Phospholipase A(2).	0.850
LOC109976280	LOC109983318	ENSLBEP00000019197	ENSLBEP00000027834	Phospholipase A2, group XIIA.	PA2c domain-containing protein.	0.865
LOC109976280	LOC109990367	ENSLBEP00000019197	ENSLBEP00000031226	Phospholipase A2, group XIIA.	Phospholipase A(2).	0.911
LOC109976280	LOC109996763	ENSLBEP00000019197	ENSLBEP00000034548	Phospholipase A2, group XIIA.	PA2c domain-containing protein.	0.865