20 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109987831	Pantothenate kinase 1a. (460 aa)
	slc25a16	Solute carrier family 25 member 16; Belongs to the mitochondrial carrier (TC 2.A.29) family. (317 aa)
	ENSLBEP00000008503	Uncharacterized protein. (131 aa)
	LOC109977714	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1697 aa)
	LOC110001483	Solute carrier family 5 member 6a; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (642 aa)
	pank4	Pantothenate kinase. (780 aa)
	LOC109983517	Uncharacterized protein. (148 aa)
	coasy	CoA synthase. (535 aa)
	dcakd	Dephospho-CoA kinase domain containing. (229 aa)
	LOC110002033	Pantothenate kinase 2. (436 aa)
	LOC109987672	Coiled-coil domain containing 57. (2508 aa)
	ENSLBEP00000033299	Dynein light chain. (127 aa)
	ppcs	Phosphopantothenoylcysteine synthetase. (353 aa)
	aasdhppt	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase. (297 aa)
	ENSLBEP00000023437	Carrier domain-containing protein. (530 aa)
	ppcdc	Phosphopantothenoylcysteine decarboxylase. (220 aa)
	ENSLBEP00000019960	Dynein light chain. (155 aa)
	LOC109983738	Si:dkey-61p9.11. (2088 aa)
	LOC109983749	Carrier domain-containing protein. (2069 aa)
	pdzd11	PDZ domain containing 11. (151 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000008503	aasdhppt	ENSLBEP00000008503	ENSLBEP00000025328	Uncharacterized protein.	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	0.958
ENSLBEP00000008503	coasy	ENSLBEP00000008503	ENSLBEP00000005313	Uncharacterized protein.	CoA synthase.	0.686
ENSLBEP00000008503	dcakd	ENSLBEP00000008503	ENSLBEP00000005475	Uncharacterized protein.	Dephospho-CoA kinase domain containing.	0.658
ENSLBEP00000023437	aasdhppt	ENSLBEP00000023437	ENSLBEP00000025328	Carrier domain-containing protein.	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	0.963
ENSLBEP00000023437	coasy	ENSLBEP00000023437	ENSLBEP00000005313	Carrier domain-containing protein.	CoA synthase.	0.686
ENSLBEP00000023437	dcakd	ENSLBEP00000023437	ENSLBEP00000005475	Carrier domain-containing protein.	Dephospho-CoA kinase domain containing.	0.658
LOC109977714	pdzd11	ENSLBEP00000005776	ENSLBEP00000011243	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	PDZ domain containing 11.	0.786
LOC109983517	coasy	ENSLBEP00000002737	ENSLBEP00000005313	Uncharacterized protein.	CoA synthase.	0.933
LOC109983517	dcakd	ENSLBEP00000002737	ENSLBEP00000005475	Uncharacterized protein.	Dephospho-CoA kinase domain containing.	0.724
LOC109983517	pank4	ENSLBEP00000002737	ENSLBEP00000002412	Uncharacterized protein.	Pantothenate kinase.	0.761
LOC109983517	ppcdc	ENSLBEP00000002737	ENSLBEP00000020999	Uncharacterized protein.	Phosphopantothenoylcysteine decarboxylase.	0.724
LOC109983517	ppcs	ENSLBEP00000002737	ENSLBEP00000031950	Uncharacterized protein.	Phosphopantothenoylcysteine synthetase.	0.800
LOC109983738	aasdhppt	ENSLBEP00000013990	ENSLBEP00000025328	Si:dkey-61p9.11.	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	0.963
LOC109983738	coasy	ENSLBEP00000013990	ENSLBEP00000005313	Si:dkey-61p9.11.	CoA synthase.	0.686
LOC109983738	dcakd	ENSLBEP00000013990	ENSLBEP00000005475	Si:dkey-61p9.11.	Dephospho-CoA kinase domain containing.	0.658
LOC109983749	aasdhppt	ENSLBEP00000013887	ENSLBEP00000025328	Carrier domain-containing protein.	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	0.963
LOC109983749	coasy	ENSLBEP00000013887	ENSLBEP00000005313	Carrier domain-containing protein.	CoA synthase.	0.686
LOC109983749	dcakd	ENSLBEP00000013887	ENSLBEP00000005475	Carrier domain-containing protein.	Dephospho-CoA kinase domain containing.	0.658
LOC109987672	aasdhppt	ENSLBEP00000034600	ENSLBEP00000025328	Coiled-coil domain containing 57.	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	0.963
LOC109987672	coasy	ENSLBEP00000034600	ENSLBEP00000005313	Coiled-coil domain containing 57.	CoA synthase.	0.686