(20 nodes) Phosphorylation of CD3 and TCR zeta chains network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pag1	Phosphoprotein membrane anchor with glycosphingolipid microdomains 1. (375 aa)
	LOC110002088	Uncharacterized protein. (612 aa)
	ENSLBEP00000028507	Ig-like domain-containing protein. (127 aa)
	ENSLBEP00000028376	Ig-like domain-containing protein. (283 aa)
	LOC109975245	Uncharacterized protein. (141 aa)
	LOC110005576	Tyrosine-protein kinase. (451 aa)
	ENSLBEP00000009772	Ig-like domain-containing protein. (192 aa)
	ENSLBEP00000011958	Uncharacterized protein. (171 aa)
	ENSLBEP00000013899	Ig-like domain-containing protein. (151 aa)
	ptpn12	Uncharacterized protein. (792 aa)
	ENSLBEP00000007445	Uncharacterized protein. (264 aa)
	ENSLBEP00000023453	SH3 domain-containing protein. (33 aa)
	LOC114921745	T-cell receptor alpha joining 28. (171 aa)
	ENSLBEP00000016708	Uncharacterized protein. (158 aa)
	cd3e	Ig_4 domain-containing protein. (175 aa)
	LOC110004515	Tyrosine-protein kinase CSK-like. (451 aa)
	ENSLBEP00000017920	Ig-like domain-containing protein. (190 aa)
	ENSLBEP00000019104	Ig-like domain-containing protein. (326 aa)
	LOC109993165	Protein tyrosine phosphatase non-receptor type 22. (834 aa)
	ENSLBEP00000023088	Uncharacterized protein. (302 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000007445	ENSLBEP00000016708	ENSLBEP00000007445	ENSLBEP00000016708	Uncharacterized protein.	Uncharacterized protein.	0.711
ENSLBEP00000007445	LOC109975245	ENSLBEP00000007445	ENSLBEP00000024450	Uncharacterized protein.	Uncharacterized protein.	0.542
ENSLBEP00000007445	LOC110002088	ENSLBEP00000007445	ENSLBEP00000038084	Uncharacterized protein.	Uncharacterized protein.	0.542
ENSLBEP00000007445	LOC114921745	ENSLBEP00000007445	ENSLBEP00000003816	Uncharacterized protein.	T-cell receptor alpha joining 28.	0.781
ENSLBEP00000007445	cd3e	ENSLBEP00000007445	ENSLBEP00000016724	Uncharacterized protein.	Ig_4 domain-containing protein.	0.807
ENSLBEP00000009772	ENSLBEP00000016708	ENSLBEP00000009772	ENSLBEP00000016708	Ig-like domain-containing protein.	Uncharacterized protein.	0.711
ENSLBEP00000009772	LOC109975245	ENSLBEP00000009772	ENSLBEP00000024450	Ig-like domain-containing protein.	Uncharacterized protein.	0.542
ENSLBEP00000009772	LOC110002088	ENSLBEP00000009772	ENSLBEP00000038084	Ig-like domain-containing protein.	Uncharacterized protein.	0.542
ENSLBEP00000009772	LOC114921745	ENSLBEP00000009772	ENSLBEP00000003816	Ig-like domain-containing protein.	T-cell receptor alpha joining 28.	0.781
ENSLBEP00000009772	cd3e	ENSLBEP00000009772	ENSLBEP00000016724	Ig-like domain-containing protein.	Ig_4 domain-containing protein.	0.807
ENSLBEP00000011958	ENSLBEP00000023453	ENSLBEP00000011958	ENSLBEP00000023453	Uncharacterized protein.	SH3 domain-containing protein.	0.447
ENSLBEP00000011958	LOC109993165	ENSLBEP00000011958	ENSLBEP00000022963	Uncharacterized protein.	Protein tyrosine phosphatase non-receptor type 22.	0.411
ENSLBEP00000011958	LOC110004515	ENSLBEP00000011958	ENSLBEP00000017377	Uncharacterized protein.	Tyrosine-protein kinase CSK-like.	0.447
ENSLBEP00000011958	LOC110005576	ENSLBEP00000011958	ENSLBEP00000004760	Uncharacterized protein.	Tyrosine-protein kinase.	0.447
ENSLBEP00000011958	cd3e	ENSLBEP00000011958	ENSLBEP00000016724	Uncharacterized protein.	Ig_4 domain-containing protein.	0.490
ENSLBEP00000011958	ptpn12	ENSLBEP00000011958	ENSLBEP00000038410	Uncharacterized protein.	Uncharacterized protein.	0.411
ENSLBEP00000013899	ENSLBEP00000016708	ENSLBEP00000013899	ENSLBEP00000016708	Ig-like domain-containing protein.	Uncharacterized protein.	0.711
ENSLBEP00000013899	LOC109975245	ENSLBEP00000013899	ENSLBEP00000024450	Ig-like domain-containing protein.	Uncharacterized protein.	0.542
ENSLBEP00000013899	LOC110002088	ENSLBEP00000013899	ENSLBEP00000038084	Ig-like domain-containing protein.	Uncharacterized protein.	0.542
ENSLBEP00000013899	LOC114921745	ENSLBEP00000013899	ENSLBEP00000003816	Ig-like domain-containing protein.	T-cell receptor alpha joining 28.	0.781