17 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cd276	CD276 molecule. (340 aa)
	pak1	Non-specific serine/threonine protein kinase. (576 aa)
	pak2	Non-specific serine/threonine protein kinase. (530 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	CDC42	Cell division cycle 42. (203 aa)
	PAK3	Non-specific serine/threonine protein kinase. (574 aa)
	fyn	Tyrosine-protein kinase. (482 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	vtcn1	V-set domain containing T cell activation inhibitor 1. (273 aa)
	lck	Tyrosine-protein kinase. (499 aa)
	LOC109978465	Serine/threonine-protein kinase PAK 2. (530 aa)
	grb2	Growth factor receptor bound protein 2. (230 aa)
	LOC109976595	Uncharacterized protein. (221 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	LOC109998972	Uncharacterized protein. (206 aa)
	PAK2	Non-specific serine/threonine protein kinase. (510 aa)
	LOC109987579	Tyrosine-protein kinase. (537 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC109976595	ENSLBEP00000014221	ENSLBEP00000028315	Cell division cycle 42.	Uncharacterized protein.	0.609
CDC42	LOC109978465	ENSLBEP00000014221	ENSLBEP00000021345	Cell division cycle 42.	Serine/threonine-protein kinase PAK 2.	0.949
CDC42	LOC109987579	ENSLBEP00000014221	ENSLBEP00000038378	Cell division cycle 42.	Tyrosine-protein kinase.	0.740
CDC42	LOC109995395	ENSLBEP00000014221	ENSLBEP00000015957	Cell division cycle 42.	Uncharacterized protein.	0.815
CDC42	LOC110003296	ENSLBEP00000014221	ENSLBEP00000030398	Cell division cycle 42.	Uncharacterized protein.	0.816
CDC42	PAK2	ENSLBEP00000014221	ENSLBEP00000037898	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.953
CDC42	PAK3	ENSLBEP00000014221	ENSLBEP00000003730	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.979
CDC42	fyn	ENSLBEP00000014221	ENSLBEP00000014893	Cell division cycle 42.	Tyrosine-protein kinase.	0.740
CDC42	grb2	ENSLBEP00000014221	ENSLBEP00000022583	Cell division cycle 42.	Growth factor receptor bound protein 2.	0.807
CDC42	lck	ENSLBEP00000014221	ENSLBEP00000017850	Cell division cycle 42.	Tyrosine-protein kinase.	0.662
CDC42	pak1	ENSLBEP00000014221	ENSLBEP00000012945	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.979
CDC42	pak2	ENSLBEP00000014221	ENSLBEP00000013620	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.949
LOC109976595	CDC42	ENSLBEP00000028315	ENSLBEP00000014221	Uncharacterized protein.	Cell division cycle 42.	0.609
LOC109976595	LOC109978465	ENSLBEP00000028315	ENSLBEP00000021345	Uncharacterized protein.	Serine/threonine-protein kinase PAK 2.	0.605
LOC109976595	LOC109987579	ENSLBEP00000028315	ENSLBEP00000038378	Uncharacterized protein.	Tyrosine-protein kinase.	0.652
LOC109976595	LOC109994148	ENSLBEP00000028315	ENSLBEP00000013739	Uncharacterized protein.	Cell division cycle 42.	0.609
LOC109976595	LOC109995395	ENSLBEP00000028315	ENSLBEP00000015957	Uncharacterized protein.	Uncharacterized protein.	0.609
LOC109976595	LOC110003296	ENSLBEP00000028315	ENSLBEP00000030398	Uncharacterized protein.	Uncharacterized protein.	0.609
LOC109976595	PAK2	ENSLBEP00000028315	ENSLBEP00000037898	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.605
LOC109976595	PAK3	ENSLBEP00000028315	ENSLBEP00000003730	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.605