57 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109984050	Transcription factor 3a. (635 aa)
	LOC109975415	Uncharacterized protein. (183 aa)
	LOC110005523	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (475 aa)
	ENSLBEP00000004057	Uncharacterized protein. (1349 aa)
	cdh15	Cadherin 15, type 1, M-cadherin (myotubule); Cadherins are calcium-dependent cell adhesion proteins. (777 aa)
	LOC109995755	Solute carrier family 25 member 23b; Belongs to the mitochondrial carrier (TC 2.A.29) family. (482 aa)
	LOC109982551	ATCAY kinesin light chain interacting caytaxin a. (372 aa)
	LOC110004306	HJURP_C domain-containing protein. (409 aa)
	LOC109984841	Myogenic factor. (301 aa)
	LOC110000442	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (490 aa)
	LOC110001009	Sperm associated antigen 9a. (1294 aa)
	mef2c	Myocyte enhancer factor 2cb. (478 aa)
	LOC109992345	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (933 aa)
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (782 aa)
	LOC109988324	Mitogen-activated protein kinase. (361 aa)
	LOC109981499	Mitogen-activated protein kinase. (364 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	LOC109984231	Mitogen-activated protein kinase. (361 aa)
	CDC42	Cell division cycle 42. (203 aa)
	mef2a	Myocyte enhancer factor 2aa. (468 aa)
	myog	Myogenin. (250 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	TCF4	Transcription factor 4. (531 aa)
	LOC110003808	Solute carrier family 25 member 24, like; Belongs to the mitochondrial carrier (TC 2.A.29) family. (450 aa)
	LOC109994795	Mitogen-activated protein kinase. (360 aa)
	LOC109982721	Myocyte enhancer factor 2b. (423 aa)
	ENSLBEP00000020594	BHLH domain-containing protein. (435 aa)
	LOC109993679	Si:dkey-17m8.1. (992 aa)
	LOC109983934	Cadherin 4, type 1, R-cadherin (retinal); Cadherins are calcium-dependent cell adhesion proteins. (925 aa)
	LOC110002510	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (471 aa)
	LOC110005054	ATCAY kinesin light chain interacting caytaxin b. (353 aa)
	bnip2	BCL2 interacting protein 2. (479 aa)
	tcf3-2	Transcription factor 3b. (630 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (910 aa)
	boc	BOC cell adhesion associated, oncogene regulated. (980 aa)
	LOC109995497	Cell adhesion associated, oncogene regulated. (1096 aa)
	abl1	Tyrosine-protein kinase. (1132 aa)
	slc25a25	Solute carrier family 25 member 25b; Belongs to the mitochondrial carrier (TC 2.A.29) family. (423 aa)
	ENSLBEP00000026400	EF-hand domain-containing protein. (70 aa)
	slc25a24	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (475 aa)
	ctnna2	Catenin (cadherin-associated protein), alpha 2. (518 aa)
	myf6	Myogenic factor 6. (239 aa)
	myf5	Myogenic factor. (241 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	SPAG9	Sperm associated antigen 9. (1330 aa)
	mapk8ip3	Mitogen-activated protein kinase 8 interacting protein 3. (1359 aa)
	ENSLBEP00000032575	MADS-box domain-containing protein. (159 aa)
	LOC109984012	Calcium-binding mitochondrial carrier protein SCaMC-1-like. (475 aa)
	tcf12	Transcription factor 12. (718 aa)
	LOC109988648	Myogenic factor. (265 aa)
	MEF2D	MADS-box domain-containing protein. (592 aa)
	LOC110002797	BHLH domain-containing protein. (352 aa)
	LOC109988075	Catenin (cadherin-associated protein), alpha 1. (856 aa)
	LOC109999131	Catenin alpha 2. (341 aa)
	LOC109984590	Mitogen-activated protein kinase. (357 aa)
	mapk11	Mitogen-activated protein kinase. (361 aa)
	CDH2-2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (915 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	CDH2	ENSLBEP00000014221	ENSLBEP00000023804	Cell division cycle 42.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.616
CDC42	CDH2-2	ENSLBEP00000014221	ENSLBEP00000037704	Cell division cycle 42.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.616
CDC42	ENSLBEP00000004057	ENSLBEP00000014221	ENSLBEP00000004057	Cell division cycle 42.	Uncharacterized protein.	0.635
CDC42	ENSLBEP00000032575	ENSLBEP00000014221	ENSLBEP00000032575	Cell division cycle 42.	MADS-box domain-containing protein.	0.555
CDC42	LOC109981499	ENSLBEP00000014221	ENSLBEP00000012339	Cell division cycle 42.	Mitogen-activated protein kinase.	0.794
CDC42	LOC109982721	ENSLBEP00000014221	ENSLBEP00000020521	Cell division cycle 42.	Myocyte enhancer factor 2b.	0.673
CDC42	LOC109983934	ENSLBEP00000014221	ENSLBEP00000021495	Cell division cycle 42.	Cadherin 4, type 1, R-cadherin (retinal); Cadherins are calcium-dependent cell adhesion proteins.	0.596
CDC42	LOC109984231	ENSLBEP00000014221	ENSLBEP00000014013	Cell division cycle 42.	Mitogen-activated protein kinase.	0.794
CDC42	LOC109984590	ENSLBEP00000014221	ENSLBEP00000037216	Cell division cycle 42.	Mitogen-activated protein kinase.	0.868
CDC42	LOC109988075	ENSLBEP00000014221	ENSLBEP00000036842	Cell division cycle 42.	Catenin (cadherin-associated protein), alpha 1.	0.640
CDC42	LOC109988324	ENSLBEP00000014221	ENSLBEP00000010297	Cell division cycle 42.	Mitogen-activated protein kinase.	0.868
CDC42	LOC109992345	ENSLBEP00000014221	ENSLBEP00000009029	Cell division cycle 42.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.596
CDC42	LOC109993679	ENSLBEP00000014221	ENSLBEP00000020879	Cell division cycle 42.	Si:dkey-17m8.1.	0.619
CDC42	LOC109994795	ENSLBEP00000014221	ENSLBEP00000019872	Cell division cycle 42.	Mitogen-activated protein kinase.	0.794
CDC42	LOC109995395	ENSLBEP00000014221	ENSLBEP00000015957	Cell division cycle 42.	Uncharacterized protein.	0.815
CDC42	LOC109995497	ENSLBEP00000014221	ENSLBEP00000024603	Cell division cycle 42.	Cell adhesion associated, oncogene regulated.	0.658
CDC42	LOC109999131	ENSLBEP00000014221	ENSLBEP00000037161	Cell division cycle 42.	Catenin alpha 2.	0.640
CDC42	LOC110001009	ENSLBEP00000014221	ENSLBEP00000006897	Cell division cycle 42.	Sperm associated antigen 9a.	0.619
CDC42	LOC110003296	ENSLBEP00000014221	ENSLBEP00000030398	Cell division cycle 42.	Uncharacterized protein.	0.816
CDC42	MEF2D	ENSLBEP00000014221	ENSLBEP00000034038	Cell division cycle 42.	MADS-box domain-containing protein.	0.555