47 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000000247	Uncharacterized protein. (497 aa)
	acadm	Acyl-CoA dehydrogenase medium chain. (424 aa)
	LOC110002275	Acyl-CoA synthetase family member 2. (558 aa)
	mcee	Methylmalonyl CoA epimerase. (173 aa)
	acbd6	Acyl-CoA binding domain containing 6. (299 aa)
	ENSLBEP00000006820	Acyl-CoA thioesterase 7. (215 aa)
	LOC109990027	Thioesterase superfamily member 4. (250 aa)
	LOC109997509	Uncharacterized protein. (445 aa)
	ENSLBEP00000008843	Acyl-CoA binding domain containing 7. (88 aa)
	hadha	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b; Belongs to the enoyl-CoA hydratase/isomerase family. (763 aa)
	ENSLBEP00000008996	Uncharacterized protein. (427 aa)
	ENSLBEP00000009082	Uncharacterized protein. (414 aa)
	eci1	Enoyl-CoA delta isomerase 1; Belongs to the enoyl-CoA hydratase/isomerase family. (303 aa)
	acadl	Acyl-CoA dehydrogenase long chain. (424 aa)
	LOC109977161	Uncharacterized protein. (416 aa)
	cunh15orf41	Zgc:154061. (299 aa)
	acadvl	Acyl-CoA dehydrogenase very long chain. (658 aa)
	pccb	Propionyl-CoA carboxylase subunit beta. (655 aa)
	pctp	Phosphatidylcholine transfer protein. (213 aa)
	mecr	Mitochondrial trans-2-enoyl-CoA reductase. (382 aa)
	LOC109997342	Uncharacterized protein. (621 aa)
	LOC109991657	Uncharacterized protein. (426 aa)
	acad11	Acyl-CoA dehydrogenase family, member 11. (754 aa)
	DBI	ACB domain-containing protein. (63 aa)
	mindy2	MINDY lysine 48 deubiquitinase 2. (665 aa)
	acaa2	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
	LOC109989786	Zgc:101569; Belongs to the enoyl-CoA hydratase/isomerase family. (309 aa)
	mmut	Methylmalonyl CoA mutase. (742 aa)
	mindy1	MINDY lysine 48 deubiquitinase 1. (600 aa)
	ENSLBEP00000029074	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (146 aa)
	mcat	Malonyl CoA:ACP acyltransferase (mitochondrial). (381 aa)
	LOC110000195	Uncharacterized protein. (609 aa)
	aamdc	Adipogenesis associated, Mth938 domain containing. (122 aa)
	HADHB	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family. (473 aa)
	ACOT7	Acyl-CoA thioesterase 7. (188 aa)
	acot13	Acyl-CoA thioesterase 13. (142 aa)
	mmaa	Metabolism of cobalamin associated A. (415 aa)
	acot11	Acyl-CoA thioesterase 11b. (635 aa)
	LOC109988456	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family. (473 aa)
	LOC109988426	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha a; Belongs to the enoyl-CoA hydratase/isomerase family. (681 aa)
	acot9	Acyl-CoA thioesterase 9, tandem duplicate 2. (474 aa)
	ENSLBEP00000020700	Uncharacterized protein. (90 aa)
	hadh	Hydroxyacyl-CoA dehydrogenase. (309 aa)
	echs1	Enoyl CoA hydratase, short chain, 1, mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family. (348 aa)
	ECHDC1	Ethylmalonyl-CoA decarboxylase 1; Belongs to the enoyl-CoA hydratase/isomerase family. (307 aa)
	ENSLBEP00000016716	Diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein). (82 aa)
	LOC109979461	Uncharacterized protein. (402 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACOT7	ECHDC1	ENSLBEP00000025092	ENSLBEP00000010025	Acyl-CoA thioesterase 7.	Ethylmalonyl-CoA decarboxylase 1; Belongs to the enoyl-CoA hydratase/isomerase family.	0.632
ACOT7	ENSLBEP00000000247	ENSLBEP00000025092	ENSLBEP00000000247	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.629
ACOT7	ENSLBEP00000006820	ENSLBEP00000025092	ENSLBEP00000006820	Acyl-CoA thioesterase 7.	Acyl-CoA thioesterase 7.	0.945
ACOT7	ENSLBEP00000008996	ENSLBEP00000025092	ENSLBEP00000008996	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.629
ACOT7	ENSLBEP00000009082	ENSLBEP00000025092	ENSLBEP00000009082	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.629
ACOT7	ENSLBEP00000020700	ENSLBEP00000025092	ENSLBEP00000020700	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.574
ACOT7	HADHB	ENSLBEP00000025092	ENSLBEP00000026196	Acyl-CoA thioesterase 7.	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family.	0.556
ACOT7	LOC109977161	ENSLBEP00000025092	ENSLBEP00000018010	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.629
ACOT7	LOC109979461	ENSLBEP00000025092	ENSLBEP00000017935	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.629
ACOT7	LOC109988426	ENSLBEP00000025092	ENSLBEP00000021908	Acyl-CoA thioesterase 7.	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha a; Belongs to the enoyl-CoA hydratase/isomerase family.	0.634
ACOT7	LOC109988456	ENSLBEP00000025092	ENSLBEP00000022039	Acyl-CoA thioesterase 7.	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family.	0.556
ACOT7	LOC109989786	ENSLBEP00000025092	ENSLBEP00000033314	Acyl-CoA thioesterase 7.	Zgc:101569; Belongs to the enoyl-CoA hydratase/isomerase family.	0.632
ACOT7	LOC109990027	ENSLBEP00000025092	ENSLBEP00000007750	Acyl-CoA thioesterase 7.	Thioesterase superfamily member 4.	0.841
ACOT7	LOC109991657	ENSLBEP00000025092	ENSLBEP00000035599	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.629
ACOT7	LOC109997342	ENSLBEP00000025092	ENSLBEP00000036670	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.676
ACOT7	LOC109997509	ENSLBEP00000025092	ENSLBEP00000008795	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.629
ACOT7	aamdc	ENSLBEP00000025092	ENSLBEP00000027422	Acyl-CoA thioesterase 7.	Adipogenesis associated, Mth938 domain containing.	0.574
ACOT7	acaa2	ENSLBEP00000025092	ENSLBEP00000033401	Acyl-CoA thioesterase 7.	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.554
ACOT7	acadl	ENSLBEP00000025092	ENSLBEP00000009663	Acyl-CoA thioesterase 7.	Acyl-CoA dehydrogenase long chain.	0.580
ACOT7	acadm	ENSLBEP00000025092	ENSLBEP00000000826	Acyl-CoA thioesterase 7.	Acyl-CoA dehydrogenase medium chain.	0.571