60 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	peak3	PEAK family member 3. (214 aa)
	SPTBN1-2	Spectrin beta chain; Belongs to the spectrin family. (2286 aa)
	epha2	Eph receptor A2 b. (1039 aa)
	git1	G protein-coupled receptor kinase interacting ArfGAP 1. (787 aa)
	nck2	Cytoplasmic protein. (411 aa)
	nck1	Cytoplasmic protein. (393 aa)
	LOC109988516	Spectrin alpha, non-erythrocytic 1. (2319 aa)
	txnl1	Thioredoxin-like 1. (289 aa)
	peak1	Pseudopodium-enriched atypical kinase 1. (1955 aa)
	LOC109983989	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2582 aa)
	LOC109976595	Uncharacterized protein. (221 aa)
	ENSLBEP00000029904	Eph receptor A2 a. (922 aa)
	ENSLBEP00000030319	Rho-GAP domain-containing protein. (1202 aa)
	ENSLBEP00000030364	Rho-GAP domain-containing protein. (309 aa)
	ENSLBEP00000030390	Uncharacterized protein. (72 aa)
	ENSLBEP00000001062	PH domain-containing protein. (131 aa)
	SPTBN1	Spectrin beta chain; Belongs to the spectrin family. (2110 aa)
	ptk2b	Protein tyrosine kinase 2 beta, b; Belongs to the protein kinase superfamily. Tyr protein kinase family. (993 aa)
	dlg5	Discs, large homolog 5a (Drosophila); Belongs to the MAGUK family. (1858 aa)
	PAK3	Non-specific serine/threonine protein kinase. (574 aa)
	ENSLBEP00000004678	Rho-GAP domain-containing protein. (69 aa)
	ENSLBEP00000004788	Uncharacterized protein. (63 aa)
	ENSLBEP00000005493	Rho-GAP domain-containing protein. (64 aa)
	ENSLBEP00000019154	Eph receptor A2 a. (926 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (515 aa)
	VANGL1	Vang-like protein. (536 aa)
	ENSLBEP00000021020	Uncharacterized protein. (353 aa)
	ENSLBEP00000021078	PH_9 domain-containing protein. (685 aa)
	LOC109978465	Serine/threonine-protein kinase PAK 2. (530 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (517 aa)
	grb2	Growth factor receptor bound protein 2. (230 aa)
	LOC109981137	G protein-coupled receptor kinase interacting ArfGAP 2b. (663 aa)
	arhgef7	Rho guanine nucleotide exchange factor (GEF) 7a. (799 aa)
	arhgap32	Rho GTPase activating protein 32b. (2045 aa)
	PAK2	Non-specific serine/threonine protein kinase. (510 aa)
	LOC109996772	Ras homolog family member Ub. (243 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (765 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	ENSLBEP00000006483	Uncharacterized protein. (162 aa)
	depdc1b	Rho-GAP domain-containing protein. (532 aa)
	ENSLBEP00000007804	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (892 aa)
	git2	G protein-coupled receptor kinase interacting ArfGAP 2a. (760 aa)
	LOC109980209	Uncharacterized protein. (577 aa)
	LOC109998041	E3 ubiquitin-protein ligase. (820 aa)
	LOC109999324	Rho guanine nucleotide exchange factor (GEF) 7b. (651 aa)
	ENSLBEP00000010259	Uncharacterized protein. (287 aa)
	LOC109999319	Uncharacterized protein. (923 aa)
	LOC109990056	Intersectin 2a. (1567 aa)
	ENSLBEP00000011895	HECT domain-containing protein. (101 aa)
	pak1	Non-specific serine/threonine protein kinase. (576 aa)
	ENSLBEP00000013035	VHS domain-containing protein. (42 aa)
	arhgef6	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6. (773 aa)
	pak2	Non-specific serine/threonine protein kinase. (530 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	pak4	Non-specific serine/threonine protein kinase. (658 aa)
	CDC42	Cell division cycle 42. (203 aa)
	TXNL1	Thioredoxin like 1. (268 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	srgap2	SLIT-ROBO Rho GTPase activating protein 2. (1130 aa)
	myo6	Myosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1270 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSLBEP00000004678	ENSLBEP00000014221	ENSLBEP00000004678	Cell division cycle 42.	Rho-GAP domain-containing protein.	0.578
CDC42	ENSLBEP00000004788	ENSLBEP00000014221	ENSLBEP00000004788	Cell division cycle 42.	Uncharacterized protein.	0.979
CDC42	ENSLBEP00000005493	ENSLBEP00000014221	ENSLBEP00000005493	Cell division cycle 42.	Rho-GAP domain-containing protein.	0.578
CDC42	ENSLBEP00000006483	ENSLBEP00000014221	ENSLBEP00000006483	Cell division cycle 42.	Uncharacterized protein.	0.552
CDC42	ENSLBEP00000007804	ENSLBEP00000014221	ENSLBEP00000007804	Cell division cycle 42.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.539
CDC42	ENSLBEP00000010259	ENSLBEP00000014221	ENSLBEP00000010259	Cell division cycle 42.	Uncharacterized protein.	0.556
CDC42	ENSLBEP00000011895	ENSLBEP00000014221	ENSLBEP00000011895	Cell division cycle 42.	HECT domain-containing protein.	0.477
CDC42	ENSLBEP00000013035	ENSLBEP00000014221	ENSLBEP00000013035	Cell division cycle 42.	VHS domain-containing protein.	0.557
CDC42	ENSLBEP00000019154	ENSLBEP00000014221	ENSLBEP00000019154	Cell division cycle 42.	Eph receptor A2 a.	0.642
CDC42	ENSLBEP00000029904	ENSLBEP00000014221	ENSLBEP00000029904	Cell division cycle 42.	Eph receptor A2 a.	0.642
CDC42	ENSLBEP00000030319	ENSLBEP00000014221	ENSLBEP00000030319	Cell division cycle 42.	Rho-GAP domain-containing protein.	0.578
CDC42	ENSLBEP00000030364	ENSLBEP00000014221	ENSLBEP00000030364	Cell division cycle 42.	Rho-GAP domain-containing protein.	0.578
CDC42	ENSLBEP00000030390	ENSLBEP00000014221	ENSLBEP00000030390	Cell division cycle 42.	Uncharacterized protein.	0.578
CDC42	LOC109976595	ENSLBEP00000014221	ENSLBEP00000028315	Cell division cycle 42.	Uncharacterized protein.	0.609
CDC42	LOC109978465	ENSLBEP00000014221	ENSLBEP00000021345	Cell division cycle 42.	Serine/threonine-protein kinase PAK 2.	0.949
CDC42	LOC109980209	ENSLBEP00000014221	ENSLBEP00000009610	Cell division cycle 42.	Uncharacterized protein.	0.820
CDC42	LOC109981137	ENSLBEP00000014221	ENSLBEP00000022946	Cell division cycle 42.	G protein-coupled receptor kinase interacting ArfGAP 2b.	0.809
CDC42	LOC109983989	ENSLBEP00000014221	ENSLBEP00000027713	Cell division cycle 42.	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.	0.597
CDC42	LOC109988516	ENSLBEP00000014221	ENSLBEP00000025974	Cell division cycle 42.	Spectrin alpha, non-erythrocytic 1.	0.552
CDC42	LOC109990056	ENSLBEP00000014221	ENSLBEP00000011242	Cell division cycle 42.	Intersectin 2a.	0.979