(35 nodes) RAS processing network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	icmt	Protein-S-isoprenylcysteine O-methyltransferase. (291 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (869 aa)
	LOC110004247	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (461 aa)
	ENSLBEP00000001343	Ras converting CAAX endopeptidase 1b. (190 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	fnta	Farnesyltransferase, CAAX box, alpha. (375 aa)
	kxd1	KxDL motif containing 1. (185 aa)
	LOC109983857	Golgin A7. (154 aa)
	LOC109987061	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (479 aa)
	rce1	Ras converting CAAX endopeptidase 1a. (312 aa)
	ENSLBEP00000012604	USP domain-containing protein; Belongs to the peptidase C19 family. (216 aa)
	LOC109985547	Golgin A7 family, member Ba. (158 aa)
	LOC109983907	BH4_2 domain-containing protein. (221 aa)
	abhd17c	Abhydrolase domain containing 17C. (294 aa)
	arl2	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	ubb	Ubiquitin B. (759 aa)
	LOC109984065	Peptidase_S9 domain-containing protein. (369 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	abhd17b	Abhydrolase domain containing 17B. (288 aa)
	LOC109980140	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (134 aa)
	zdhhc18	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (464 aa)
	zdhhc9	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (392 aa)
	kras	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	GOLGA7	Golgin A7. (143 aa)
	ZDHHC14	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (510 aa)
	LOC109979768	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (457 aa)
	golga7b	Golgin A7 family member B. (158 aa)
	LOC109998395	Zgc:55558. (187 aa)
	lypla1	Lysophospholipase 1. (232 aa)
	usp36	Ubiquitin specific peptidase 36; Belongs to the peptidase C19 family. (1149 aa)
	prkcq	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (700 aa)
	pde6d	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...] (150 aa)
	churc1	Churchill domain containing 1. (112 aa)
	LOC109985084	BCL2 like 1. (234 aa)
	LOC109982756	Abhydrolase domain containing 17A. (321 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSLBEP00000001343	ENSLBEP00000019296	ENSLBEP00000001343	Cold shock domain containing E1, RNA-binding.	Ras converting CAAX endopeptidase 1b.	0.661
CSDE1	GOLGA7	ENSLBEP00000019296	ENSLBEP00000036241	Cold shock domain containing E1, RNA-binding.	Golgin A7.	0.565
CSDE1	LOC109979768	ENSLBEP00000019296	ENSLBEP00000017563	Cold shock domain containing E1, RNA-binding.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.683
CSDE1	LOC109980140	ENSLBEP00000019296	ENSLBEP00000007772	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.556
CSDE1	LOC109982756	ENSLBEP00000019296	ENSLBEP00000025672	Cold shock domain containing E1, RNA-binding.	Abhydrolase domain containing 17A.	0.515
CSDE1	LOC109983857	ENSLBEP00000019296	ENSLBEP00000019968	Cold shock domain containing E1, RNA-binding.	Golgin A7.	0.565
CSDE1	LOC109983907	ENSLBEP00000019296	ENSLBEP00000023557	Cold shock domain containing E1, RNA-binding.	BH4_2 domain-containing protein.	0.678
CSDE1	LOC109984065	ENSLBEP00000019296	ENSLBEP00000002256	Cold shock domain containing E1, RNA-binding.	Peptidase_S9 domain-containing protein.	0.515
CSDE1	LOC109985084	ENSLBEP00000019296	ENSLBEP00000027246	Cold shock domain containing E1, RNA-binding.	BCL2 like 1.	0.678
CSDE1	LOC109985547	ENSLBEP00000019296	ENSLBEP00000015027	Cold shock domain containing E1, RNA-binding.	Golgin A7 family, member Ba.	0.565
CSDE1	LOC109987061	ENSLBEP00000019296	ENSLBEP00000002161	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.556
CSDE1	LOC110004247	ENSLBEP00000019296	ENSLBEP00000001955	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.556
CSDE1	ZDHHC14	ENSLBEP00000019296	ENSLBEP00000032118	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.556
CSDE1	abhd17b	ENSLBEP00000019296	ENSLBEP00000006989	Cold shock domain containing E1, RNA-binding.	Abhydrolase domain containing 17B.	0.515
CSDE1	abhd17c	ENSLBEP00000019296	ENSLBEP00000023033	Cold shock domain containing E1, RNA-binding.	Abhydrolase domain containing 17C.	0.515
CSDE1	arl2	ENSLBEP00000019296	ENSLBEP00000021470	Cold shock domain containing E1, RNA-binding.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.657
CSDE1	churc1	ENSLBEP00000019296	ENSLBEP00000027537	Cold shock domain containing E1, RNA-binding.	Churchill domain containing 1.	0.683
CSDE1	fnta	ENSLBEP00000019296	ENSLBEP00000018156	Cold shock domain containing E1, RNA-binding.	Farnesyltransferase, CAAX box, alpha.	0.716
CSDE1	golga7b	ENSLBEP00000019296	ENSLBEP00000031613	Cold shock domain containing E1, RNA-binding.	Golgin A7 family member B.	0.565
CSDE1	icmt	ENSLBEP00000019296	ENSLBEP00000019875	Cold shock domain containing E1, RNA-binding.	Protein-S-isoprenylcysteine O-methyltransferase.	0.736