33 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAC1-2	Rac family small GTPase 1. (192 aa)
	LOC109983070	Rho family GTPase 2. (234 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	LOC109994817	Rho family GTPase 1b. (232 aa)
	LOC109981514	Uncharacterized protein. (193 aa)
	RND1	Rho family GTPase 1. (232 aa)
	LOC109981150	Ras homolog family member F. (207 aa)
	RHOB	Ras homolog family member B. (141 aa)
	LOC109990297	Uncharacterized protein. (193 aa)
	ENSLBEP00000029274	Uncharacterized protein. (139 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	rhov	Ras homolog family member V. (236 aa)
	LOC109996877	Rho family GTPase 2. (231 aa)
	LOC109984913	Uncharacterized protein. (193 aa)
	LOC110001707	Rho related BTB domain containing 4. (709 aa)
	rhoq	Ras homolog family member Q. (207 aa)
	RAC1	Rac family small GTPase 1. (192 aa)
	LOC109984918	Uncharacterized protein. (205 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	LOC109981316	Uncharacterized protein. (224 aa)
	LOC109988176	Uncharacterized protein. (272 aa)
	LOC109983547	Ras homolog family member Gb. (191 aa)
	LOC109980884	Ras homolog family member Ca. (196 aa)
	rhou	Uncharacterized protein. (273 aa)
	CDC42	Cell division cycle 42. (203 aa)
	LOC109996772	Ras homolog family member Ub. (243 aa)
	ENSLBEP00000034706	Ras homolog gene family, member Gd. (112 aa)
	LOC109991165	Uncharacterized protein. (215 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	ENSLBEP00000006052	Ras homolog family member H. (190 aa)
	rhobtb2	Rho related BTB domain containing 2a. (721 aa)
	LOC109996947	Rac family small GTPase 3b. (192 aa)
	LOC109993560	Uncharacterized protein. (202 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSLBEP00000006052	ENSLBEP00000014221	ENSLBEP00000006052	Cell division cycle 42.	Ras homolog family member H.	0.680
CDC42	ENSLBEP00000034706	ENSLBEP00000014221	ENSLBEP00000034706	Cell division cycle 42.	Ras homolog gene family, member Gd.	0.675
CDC42	LOC109980884	ENSLBEP00000014221	ENSLBEP00000002979	Cell division cycle 42.	Ras homolog family member Ca.	0.756
CDC42	LOC109981150	ENSLBEP00000014221	ENSLBEP00000026508	Cell division cycle 42.	Ras homolog family member F.	0.593
CDC42	LOC109981514	ENSLBEP00000014221	ENSLBEP00000020602	Cell division cycle 42.	Uncharacterized protein.	0.755
CDC42	LOC109983547	ENSLBEP00000014221	ENSLBEP00000002186	Cell division cycle 42.	Ras homolog family member Gb.	0.677
CDC42	LOC109984913	ENSLBEP00000014221	ENSLBEP00000010277	Cell division cycle 42.	Uncharacterized protein.	0.756
CDC42	LOC109984918	ENSLBEP00000014221	ENSLBEP00000012644	Cell division cycle 42.	Uncharacterized protein.	0.756
CDC42	LOC109990297	ENSLBEP00000014221	ENSLBEP00000027144	Cell division cycle 42.	Uncharacterized protein.	0.755
CDC42	LOC109991165	ENSLBEP00000014221	ENSLBEP00000015298	Cell division cycle 42.	Uncharacterized protein.	0.785
CDC42	LOC109993560	ENSLBEP00000014221	ENSLBEP00000010992	Cell division cycle 42.	Uncharacterized protein.	0.756
CDC42	LOC109994817	ENSLBEP00000014221	ENSLBEP00000017431	Cell division cycle 42.	Rho family GTPase 1b.	0.625
CDC42	LOC109995395	ENSLBEP00000014221	ENSLBEP00000015957	Cell division cycle 42.	Uncharacterized protein.	0.815
CDC42	LOC109996772	ENSLBEP00000014221	ENSLBEP00000035122	Cell division cycle 42.	Ras homolog family member Ub.	0.574
CDC42	LOC109996947	ENSLBEP00000014221	ENSLBEP00000011696	Cell division cycle 42.	Rac family small GTPase 3b.	0.784
CDC42	LOC110003296	ENSLBEP00000014221	ENSLBEP00000030398	Cell division cycle 42.	Uncharacterized protein.	0.816
CDC42	RAC1	ENSLBEP00000014221	ENSLBEP00000012498	Cell division cycle 42.	Rac family small GTPase 1.	0.784
CDC42	RAC1-2	ENSLBEP00000014221	ENSLBEP00000033843	Cell division cycle 42.	Rac family small GTPase 1.	0.784
CDC42	RHOB	ENSLBEP00000014221	ENSLBEP00000026886	Cell division cycle 42.	Ras homolog family member B.	0.755
CDC42	RND1	ENSLBEP00000014221	ENSLBEP00000025417	Cell division cycle 42.	Rho family GTPase 1.	0.626