44 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109992737	Si:dkey-220k22.1. (557 aa)
	LOC109980758	Netrin 5. (643 aa)
	scarf1	Scavenger receptor class F, member 1. (867 aa)
	LOC110001412	Uncharacterized protein. (942 aa)
	stab1	Stabilin 1. (2375 aa)
	NTN1	Netrin 1. (428 aa)
	LOC110003525	Uncharacterized protein. (1126 aa)
	ntng1	Netrin g1a. (546 aa)
	ENSLBEP00000033158	Uncharacterized protein. (151 aa)
	LOC109980652	Multiple EGF-like-domains 6b. (1641 aa)
	megf10	Multiple EGF-like-domains 10. (1124 aa)
	LOC109984480	Netrin G2. (633 aa)
	ENSLBEP00000031450	Attractin-like 1a. (1339 aa)
	ENSLBEP00000029121	Uncharacterized protein. (540 aa)
	LOC109985095	Laminin, beta 2-like. (1791 aa)
	lamb2	Laminin, beta 2 (laminin S). (1785 aa)
	lamb3	Uncharacterized protein. (1157 aa)
	celsr1	Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family. (3018 aa)
	ENSLBEP00000024743	Uncharacterized protein. (525 aa)
	ENSLBEP00000024666	Si:ch211-241e1.3. (1126 aa)
	hspg2	Heparan sulfate proteoglycan 2. (3354 aa)
	LOC109992016	Platelet endothelial aggregation receptor 1. (1056 aa)
	LOC109983928	Uncharacterized protein. (658 aa)
	megf11	Multiple EGF-like-domains 11. (1130 aa)
	LOC109989134	Netrin g2a. (579 aa)
	LOC109975356	Vav 3 guanine nucleotide exchange factor b. (456 aa)
	LOC109985580	Agrin. (1838 aa)
	celsr2	Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family. (3013 aa)
	LOC109986753	Netrin 2. (634 aa)
	LAMA2	Laminin subunit alpha 2. (3039 aa)
	LOC110001690	Uncharacterized protein. (1436 aa)
	LAMB1	Laminin, beta 1a. (1791 aa)
	lama4	Laminin, alpha 4. (1806 aa)
	LOC110004195	Uncharacterized protein. (638 aa)
	ENSLBEP00000013996	Laminin, alpha 3. (1664 aa)
	scarf2	Uncharacterized protein. (949 aa)
	ntn4	Netrin 4. (626 aa)
	celsr3	Cadherin, EGF LAG seven-pass G-type receptor 3; Belongs to the G-protein coupled receptor 2 family. (3091 aa)
	LOC110002852	Netrin 1b. (600 aa)
	LOC109996378	Uncharacterized protein. (557 aa)
	LOC109991071	Zgc:158328. (1224 aa)
	atrn	Attractin. (1368 aa)
	ENSLBEP00000005998	Uncharacterized protein. (1385 aa)
	lama1	Laminin, alpha 1. (2848 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000005998	ENSLBEP00000029121	ENSLBEP00000005998	ENSLBEP00000029121	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSLBEP00000005998	LAMB1	ENSLBEP00000005998	ENSLBEP00000015618	Uncharacterized protein.	Laminin, beta 1a.	0.849
ENSLBEP00000005998	LOC109983928	ENSLBEP00000005998	ENSLBEP00000020613	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSLBEP00000005998	LOC109985095	ENSLBEP00000005998	ENSLBEP00000026840	Uncharacterized protein.	Laminin, beta 2-like.	0.849
ENSLBEP00000005998	LOC109992016	ENSLBEP00000005998	ENSLBEP00000021225	Uncharacterized protein.	Platelet endothelial aggregation receptor 1.	0.540
ENSLBEP00000005998	LOC109992737	ENSLBEP00000005998	ENSLBEP00000038529	Uncharacterized protein.	Si:dkey-220k22.1.	0.412
ENSLBEP00000005998	LOC110001412	ENSLBEP00000005998	ENSLBEP00000035796	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSLBEP00000005998	LOC110003525	ENSLBEP00000005998	ENSLBEP00000034705	Uncharacterized protein.	Uncharacterized protein.	0.876
ENSLBEP00000005998	LOC110004195	ENSLBEP00000005998	ENSLBEP00000014479	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSLBEP00000005998	lama1	ENSLBEP00000005998	ENSLBEP00000003930	Uncharacterized protein.	Laminin, alpha 1.	0.774
ENSLBEP00000005998	lamb2	ENSLBEP00000005998	ENSLBEP00000026645	Uncharacterized protein.	Laminin, beta 2 (laminin S).	0.849
ENSLBEP00000005998	lamb3	ENSLBEP00000005998	ENSLBEP00000026141	Uncharacterized protein.	Uncharacterized protein.	0.921
ENSLBEP00000005998	megf10	ENSLBEP00000005998	ENSLBEP00000032151	Uncharacterized protein.	Multiple EGF-like-domains 10.	0.540
ENSLBEP00000005998	megf11	ENSLBEP00000005998	ENSLBEP00000020517	Uncharacterized protein.	Multiple EGF-like-domains 11.	0.540
ENSLBEP00000005998	ntn4	ENSLBEP00000005998	ENSLBEP00000011387	Uncharacterized protein.	Netrin 4.	0.414
ENSLBEP00000013996	ENSLBEP00000024743	ENSLBEP00000013996	ENSLBEP00000024743	Laminin, alpha 3.	Uncharacterized protein.	0.698
ENSLBEP00000013996	ENSLBEP00000029121	ENSLBEP00000013996	ENSLBEP00000029121	Laminin, alpha 3.	Uncharacterized protein.	0.907
ENSLBEP00000013996	LAMA2	ENSLBEP00000013996	ENSLBEP00000017057	Laminin, alpha 3.	Laminin subunit alpha 2.	0.686
ENSLBEP00000013996	LAMB1	ENSLBEP00000013996	ENSLBEP00000015618	Laminin, alpha 3.	Laminin, beta 1a.	0.908
ENSLBEP00000013996	LOC109983928	ENSLBEP00000013996	ENSLBEP00000020613	Laminin, alpha 3.	Uncharacterized protein.	0.439