STRINGSTRING
fcf1 fcf1 arhgap42 arhgap42 nop56 nop56 imp4 imp4 ENSLBEP00000002046 ENSLBEP00000002046 ENSLBEP00000002618 ENSLBEP00000002618 utp6 utp6 nhp2 nhp2 LOC109988204 LOC109988204 vwc2l vwc2l LOC109988835 LOC109988835 mphosph10 mphosph10 ENSLBEP00000004528 ENSLBEP00000004528 rcl1 rcl1 cunh15orf40 cunh15orf40 ticrr ticrr ENSLBEP00000005983 ENSLBEP00000005983 spata5l1 spata5l1 ophn1 ophn1 LOC109997496 LOC109997496 LOC109983886 LOC109983886 nxf1 nxf1 rexo2 rexo2 LOC109986668 LOC109986668 LOC109984156 LOC109984156 LOC109986627 LOC109986627 drosha drosha rpp38 rpp38 dnttip2 dnttip2 utp4 utp4 nol6 nol6 LOC110001596 LOC110001596 emg1 emg1 imp3 imp3 csnk2a2 csnk2a2 gnl2 gnl2 ENSLBEP00000011178 ENSLBEP00000011178 tmem120a tmem120a pop5 pop5 brd3 brd3 nop58 nop58 LOC109993001 LOC109993001 REXO5 REXO5 snu13 snu13 ENSLBEP00000012438 ENSLBEP00000012438 xrn2 xrn2 ak6 ak6 LOC109991823 LOC109991823 tmem167b tmem167b ENSLBEP00000013985 ENSLBEP00000013985 gnl1 gnl1 cptp cptp gnl3 gnl3 ENSLBEP00000014688 ENSLBEP00000014688 LOC110004984 LOC110004984 LOC110001699 LOC110001699 rbm28 rbm28 nat10 nat10 ENSLBEP00000017579 ENSLBEP00000017579 wdr3 wdr3 ENSLBEP00000018085 ENSLBEP00000018085 LOC109999441 LOC109999441 nxt2 nxt2 SPATA5 SPATA5 nvl nvl LOC110004651 LOC110004651 ENSLBEP00000019905 ENSLBEP00000019905 EFL1 EFL1 LOC109977922 LOC109977922 riok2 riok2 gar1 gar1 LOC109998215 LOC109998215 LOC109977275 LOC109977275 LOC109982796 LOC109982796 ENSLBEP00000021405 ENSLBEP00000021405 LOC109997074 LOC109997074 riok1 riok1 sbds sbds tubgcp4 tubgcp4 fbl fbl kri1 kri1 eif6 eif6 LOC109983886-2 LOC109983886-2 xrn1 xrn1 LOC109976429 LOC109976429 tmem203 tmem203 dkc1 dkc1 rpp30 rpp30 ENSLBEP00000026290 ENSLBEP00000026290 znf622 znf622 tmem120b tmem120b wdr36 wdr36 gtpbp4 gtpbp4 LOC109978698 LOC109978698 LOC109985136 LOC109985136 nmd3 nmd3 LOC109989206 LOC109989206 ENSLBEP00000029506 ENSLBEP00000029506 LOC109981656 LOC109981656 wdr43 wdr43 rpp40 rpp40 retreg3 retreg3 vwc2 vwc2 ttll2 ttll2 LOC110000255 LOC110000255 LOC110002718 LOC110002718 utp15 utp15 lsg1 lsg1 POP1 POP1 adgrd1 adgrd1 retreg2 retreg2 DXO DXO ARHGAP26 ARHGAP26 utp18 utp18 nob1 nob1 ENSLBEP00000035304 ENSLBEP00000035304 mdn1 mdn1 trub1 trub1 tbl3 tbl3 LOC110001193 LOC110001193 LOC110000238 LOC110000238 LOC109989822 LOC109989822 mettl9 mettl9 LOC109983330 LOC109983330 ENSLBEP00000037396 ENSLBEP00000037396 wdr75 wdr75 LOC109989026 LOC109989026 LOC109988165 LOC109988165
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fcf1FCF1 rRNA-processing protein. (197 aa)
arhgap42Rho GTPase activating protein 42b. (903 aa)
nop56NOP56 ribonucleoprotein homolog. (567 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
ENSLBEP00000002046Uncharacterized protein. (582 aa)
ENSLBEP00000002618Uncharacterized protein. (98 aa)
utp6UTP6 small subunit processome component. (595 aa)
nhp2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (155 aa)
LOC109988204Exportin 1 (CRM1 homolog, yeast) a. (918 aa)
vwc2lVon Willebrand factor C domain containing 2 like. (268 aa)
LOC109988835Uncharacterized protein. (883 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (657 aa)
ENSLBEP00000004528Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (140 aa)
rcl1RNA terminal phosphate cyclase-like 1. (354 aa)
cunh15orf40Zgc:193812. (185 aa)
ticrrUncharacterized protein. (1681 aa)
ENSLBEP00000005983NOP10 ribonucleoprotein homolog (yeast). (64 aa)
spata5l1Spermatogenesis associated 5-like 1. (747 aa)
ophn1Oligophrenin 1. (794 aa)
LOC109997496Exportin 1 (CRM1 homolog, yeast) b. (1071 aa)
LOC109983886Guanine nucleotide binding protein-like 3 (nucleolar)-like. (573 aa)
nxf1Zgc:153681. (643 aa)
rexo2Small fragment nuclease. (189 aa)
LOC109986668Zgc:86598; Belongs to the protein kinase superfamily. (392 aa)
LOC109984156PWP2 small subunit processome component. (905 aa)
LOC109986627Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
droshaDrosha ribonuclease III. (1277 aa)
rpp38Ribonuclease P/MRP 38 subunit. (275 aa)
dnttip2Deoxynucleotidyltransferase, terminal, interacting protein 2. (908 aa)
utp4UTP4 small subunit processome component. (684 aa)
nol6Nucleolar protein 6. (1111 aa)
LOC110001596Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (241 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
csnk2a2Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (350 aa)
gnl2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (731 aa)
ENSLBEP00000011178Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (154 aa)
tmem120aTransmembrane protein 120A. (347 aa)
pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (183 aa)
brd3Bromodomain containing 3b. (670 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (535 aa)
LOC109993001GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (215 aa)
REXO5RNA exonuclease 5. (803 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
ENSLBEP00000012438Tr-type G domain-containing protein. (106 aa)
xrn25'-3' exoribonuclease 2. (503 aa)
ak6Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (174 aa)
LOC109991823Uncharacterized protein. (1373 aa)
tmem167bProtein kish; Involved in the early part of the secretory pathway. (74 aa)
ENSLBEP00000013985Uncharacterized protein. (114 aa)
gnl1Guanine nucleotide binding protein-like 1. (606 aa)
cptpCeramide-1-phosphate transfer protein. (218 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (550 aa)
ENSLBEP00000014688Ribonuclease P and MRP subunit p25, b. (172 aa)
LOC110004984Uncharacterized protein; Belongs to the AAA ATPase family. (611 aa)
LOC110001699Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (350 aa)
rbm28RNA binding motif protein 28. (777 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1039 aa)
ENSLBEP00000017579Alba domain-containing protein. (161 aa)
wdr3WD repeat domain 3. (911 aa)
ENSLBEP00000018085U3snoRNP10 domain-containing protein. (334 aa)
LOC109999441Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (223 aa)
nxt2Nuclear transport factor 2-like export factor 2. (159 aa)
SPATA5Spermatogenesis associated 5. (811 aa)
nvlNuclear VCP like. (897 aa)
LOC110004651Reticulophagy regulator 1. (329 aa)
ENSLBEP00000019905Reverse transcriptase domain-containing protein. (320 aa)
EFL1Elongation factor like GTPase 1. (1127 aa)
LOC109977922Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (294 aa)
riok2RIO kinase 2 (yeast). (524 aa)
gar1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (275 aa)
LOC109998215Uncharacterized protein. (987 aa)
LOC109977275GTP-binding nuclear protein Ran. (215 aa)
LOC109982796Si:ch211-212d10.2. (134 aa)
ENSLBEP00000021405annotation not available (120 aa)
LOC109997074Glycolipid transfer protein domain containing 2. (301 aa)
riok1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (558 aa)
sbdsSBDS ribosome maturation factor. (249 aa)
tubgcp4Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (666 aa)
fblFibrillarin. (330 aa)
kri1KRI1 homolog. (768 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (246 aa)
LOC109983886-2Guanine nucleotide-binding protein-like 3-like protein. (573 aa)
xrn15'-3' exoribonuclease 1. (1655 aa)
LOC109976429Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (223 aa)
tmem203Transmembrane protein 203. (138 aa)
dkc1Dyskeratosis congenita 1, dyskerin. (487 aa)
rpp30Ribonuclease P/MRP 30 subunit. (272 aa)
ENSLBEP00000026290Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (353 aa)
znf622Zinc finger protein 622. (475 aa)
tmem120bTransmembrane protein 120B. (338 aa)
wdr36WD repeat domain 36. (893 aa)
gtpbp4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (642 aa)
LOC109978698Ribonuclease P/MRP 25 subunit-like. (234 aa)
LOC109985136UTP14C small subunit processome component. (802 aa)
nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (506 aa)
LOC109989206Bromodomain containing 4. (1511 aa)
ENSLBEP00000029506Reticulophagy regulator 1. (268 aa)
LOC109981656Uncharacterized protein. (542 aa)
wdr43WD repeat domain 43. (649 aa)
rpp40Ribonuclease P/MRP 40 subunit. (355 aa)
retreg3Reticulophagy regulator family member 3. (495 aa)
vwc2Von Willebrand factor C domain containing 2. (310 aa)
ttll2Tubulin tyrosine ligase-like family, member 2. (480 aa)
LOC110000255XRN_M domain-containing protein. (288 aa)
LOC110002718Bromodomain containing 2. (835 aa)
utp15UTP15 small subunit processome component. (522 aa)
lsg1Large 60S subunit nuclear export GTPase 1. (602 aa)
POP1POP1 homolog, ribonuclease P/MRP subunit. (932 aa)
adgrd1Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family. (878 aa)
retreg2Reticulophagy regulator family member 2. (603 aa)
DXODecapping exoribonuclease. (422 aa)
ARHGAP26Rho GTPase activating protein 26. (786 aa)
utp18WD_REPEATS_REGION domain-containing protein. (537 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (484 aa)
ENSLBEP00000035304Zgc:152968. (966 aa)
mdn1Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5264 aa)
trub1TruB pseudouridine (psi) synthase family member 1. (286 aa)
tbl3Transducin (beta)-like 3. (929 aa)
LOC110001193REX1, RNA exonuclease 1 homolog. (1097 aa)
LOC110000238Usher syndrome 1C binding protein 1. (696 aa)
LOC109989822Zgc:103681. (339 aa)
mettl9Methyltransferase like 9. (303 aa)
LOC109983330Bromodomain, testis-specific. (1000 aa)
ENSLBEP00000037396Transmembrane protein 223. (195 aa)
wdr75WD repeat domain 75. (837 aa)
LOC109989026BMS1 ribosome biogenesis factor. (1197 aa)
LOC109988165Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily. (393 aa)
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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