STRINGSTRING
LOC109978231 LOC109978231 LOC109993619 LOC109993619 PPP1CB PPP1CB wdr77 wdr77 ENSLBEP00000016780 ENSLBEP00000016780 twf1 twf1 LOC109984234 LOC109984234 CPSF3 CPSF3 pabpc4 pabpc4 srrm1 srrm1 tmem258 tmem258 nxt2 nxt2 CFAP20 CFAP20 LOC109994809 LOC109994809 LOC109991964 LOC109991964 tut1 tut1 LOC109977913 LOC109977913 serac1 serac1 sap18 sap18 dclre1b dclre1b wdr90 wdr90 pym1 pym1 rbm8a rbm8a cpsf6 cpsf6 LOC109994832 LOC109994832 cops5 cops5 ppp1r42 ppp1r42 upf2 upf2 LOC110002514 LOC110002514 ppp2r5b ppp2r5b LOC109998777 LOC109998777 ENSLBEP00000022371 ENSLBEP00000022371 tmem240 tmem240 LOC109978556 LOC109978556 LOC110000148 LOC110000148 LOC109999342 LOC109999342 LOC110000700 LOC110000700 LOC109976494 LOC109976494 ncbp2 ncbp2 ENSLBEP00000027034 ENSLBEP00000027034 ENSLBEP00000027065 ENSLBEP00000027065 ENSLBEP00000027112 ENSLBEP00000027112 LOC110001222 LOC110001222 eif4a3 eif4a3 LOC109986325 LOC109986325 LOC109983371 LOC109983371 LOC109983968 LOC109983968 LOC109975287 LOC109975287 upf3a upf3a ssu72 ssu72 fndc10 fndc10 tardbp tardbp ppp2r3c ppp2r3c ENSLBEP00000028932 ENSLBEP00000028932 rbbp6 rbbp6 pelo pelo ENSLBEP00000029629 ENSLBEP00000029629 ENSLBEP00000029670 ENSLBEP00000029670 LOC109988168 LOC109988168 LOC109994440 LOC109994440 LOC109980573 LOC109980573 fus fus ints9 ints9 LOC109993875 LOC109993875 LOC109981665 LOC109981665 papolg papolg twf2 twf2 wdr82 wdr82 RNMT RNMT LOC109987428 LOC109987428 rnps1 rnps1 LOC109982924 LOC109982924 mkrn1 mkrn1 nudt21 nudt21 ENSLBEP00000032499 ENSLBEP00000032499 ppp4r4 ppp4r4 LOC110000867 LOC110000867 LOC109999018 LOC109999018 ppp2cb ppp2cb LOC109984495 LOC109984495 pabpn1 pabpn1 LOC109989838 LOC109989838 ppp2ca ppp2ca LOC109984562 LOC109984562 ENSLBEP00000037135 ENSLBEP00000037135 LOC109998490 LOC109998490 upf1 upf1 ENSLBEP00000037396 ENSLBEP00000037396 sympk sympk ppp2r5d ppp2r5d st13 st13 LOC109987581 LOC109987581 upf3b upf3b ENSLBEP00000038516 ENSLBEP00000038516 fip1l1 fip1l1 ENSLBEP00000038739 ENSLBEP00000038739 cirbp cirbp LOC109976680 LOC109976680 dazap1 dazap1 LOC109977373 LOC109977373 CPSF7 CPSF7 LOC109982852 LOC109982852 GSPT1 GSPT1 LOC109996822 LOC109996822 ppp1cc ppp1cc etf1 etf1 LOC109980840 LOC109980840 ENSLBEP00000001991 ENSLBEP00000001991 ENSLBEP00000002057 ENSLBEP00000002057 WDR33 WDR33 LOC109989926 LOC109989926 ENSLBEP00000002753 ENSLBEP00000002753 smg6 smg6 smg5 smg5 cstf3 cstf3 acin1 acin1 kiaa0232 kiaa0232 LOC109993470 LOC109993470 rnf141 rnf141 LOC109989975 LOC109989975 hbs1l hbs1l DDX39A DDX39A smg7 smg7 zc3h6 zc3h6 ppp4r1 ppp4r1 LOC109977434 LOC109977434 cpsf1 cpsf1 LOC109992897 LOC109992897 fnbp4 fnbp4 smg1 smg1 nedd1 nedd1 dclre1a dclre1a ENSLBEP00000005977 ENSLBEP00000005977 ENSLBEP00000006036 ENSLBEP00000006036 LOC109993517 LOC109993517 ENSLBEP00000006075 ENSLBEP00000006075 LOC109975586 LOC109975586 ncmap ncmap rbmx2 rbmx2 ENSLBEP00000006864 ENSLBEP00000006864 PPP2R5C PPP2R5C LOC110005683 LOC110005683 casc3 casc3 LOC109978929 LOC109978929 nxf1 nxf1 ENSLBEP00000007773 ENSLBEP00000007773 pih1d3 pih1d3 LOC109991822 LOC109991822 LOC110002397 LOC110002397 ENSLBEP00000008651 ENSLBEP00000008651 msi2 msi2 ENSLBEP00000011245 ENSLBEP00000011245 msi1 msi1 JAZF1 JAZF1 ppp2r5a ppp2r5a msl1 msl1 cstf1 cstf1 ENSLBEP00000013105 ENSLBEP00000013105 LOC109980928 LOC109980928 clp1 clp1 ppp2r2d ppp2r2d zc3h4 zc3h4 czib czib PPP2R2C PPP2R2C LOC109997000 LOC109997000 ints11 ints11 cpsf2 cpsf2 PABPN1L PABPN1L NCBP1 NCBP1 rngtt rngtt
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC109978231mRNA cap guanine-N7 methyltransferase. (410 aa)
LOC109993619DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (435 aa)
PPP1CBSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
wdr77WD_REPEATS_REGION domain-containing protein. (334 aa)
ENSLBEP00000016780RRM domain-containing protein. (244 aa)
twf1Twinfilin actin-binding protein 1a. (379 aa)
LOC109984234DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (452 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (661 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (629 aa)
srrm1Serine/arginine repetitive matrix 1. (861 aa)
tmem258Transmembrane protein 258. (79 aa)
nxt2Nuclear transport factor 2-like export factor 2. (159 aa)
CFAP20Cilia and flagella associated protein 20. (194 aa)
LOC109994809Makorin, ring finger protein, 4. (388 aa)
LOC109991964Uncharacterized protein. (1113 aa)
tut1Terminal uridylyl transferase 1, U6 snRNA-specific. (793 aa)
LOC109977913Uncharacterized protein. (371 aa)
serac1Serine active site containing 1. (659 aa)
sap18Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)
dclre1bDNA cross-link repair 1B. (612 aa)
wdr90WD repeat domain 90. (1581 aa)
pym1PYM homolog 1, exon junction complex associated factor. (207 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (592 aa)
LOC109994832RRM domain-containing protein. (211 aa)
cops5COP9 signalosome subunit 5. (334 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (300 aa)
upf2Uncharacterized protein. (1289 aa)
LOC110002514GLE1 RNA export mediator. (716 aa)
ppp2r5bSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (523 aa)
LOC109998777Si:ch211-244b2.4. (433 aa)
ENSLBEP00000022371Uncharacterized protein. (349 aa)
tmem240Transmembrane protein 240a. (175 aa)
LOC109978556PDZ domain-containing protein. (637 aa)
LOC110000148Cilia and flagella associated protein 20. (156 aa)
LOC109999342Protein phosphatase 2, regulatory subunit A, beta b. (685 aa)
LOC110000700Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting). (362 aa)
LOC109976494DWNN domain-containing protein. (159 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
ENSLBEP00000027034WD_REPEATS_REGION domain-containing protein. (97 aa)
ENSLBEP00000027065WD_REPEATS_REGION domain-containing protein. (200 aa)
ENSLBEP00000027112Twinfilin actin-binding protein 2b. (349 aa)
LOC110001222Cleavage and polyadenylation specific factor 3. (660 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (404 aa)
LOC109986325YTH domain containing 1. (595 aa)
LOC109983371Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (448 aa)
LOC109983968Protein phosphatase 2, regulatory subunit B'', beta. (585 aa)
LOC109975287WD_REPEATS_REGION domain-containing protein. (293 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (446 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
fndc10Uncharacterized protein. (354 aa)
tardbpTAR DNA binding protein, like. (396 aa)
ppp2r3cProtein phosphatase 2, regulatory subunit B'', gamma. (457 aa)
ENSLBEP00000028932Uncharacterized protein. (232 aa)
rbbp6Uncharacterized protein. (1616 aa)
peloProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (387 aa)
ENSLBEP00000029629Pinin_SDK_memA domain-containing protein. (551 aa)
ENSLBEP00000029670Pinin_SDK_N domain-containing protein. (124 aa)
LOC109988168Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
LOC109994440Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
LOC109980573TAR DNA binding protein. (403 aa)
fusFUS RNA binding protein. (582 aa)
ints9Integrator complex subunit 9. (658 aa)
LOC109993875Aly/REF export factor. (304 aa)
LOC109981665Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (445 aa)
papolgPoly(A) polymerase gamma. (867 aa)
twf2Twinfilin actin-binding protein 2a. (352 aa)
wdr82WD repeat domain 82. (345 aa)
RNMTmRNA cap guanine-N7 methyltransferase. (431 aa)
LOC109987428Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
rnps1RNA binding protein S1, serine-rich domain. (273 aa)
LOC109982924Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (576 aa)
mkrn1Makorin, ring finger protein, 1. (431 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
ENSLBEP00000032499TYR_PHOSPHATASE_2 domain-containing protein. (184 aa)
ppp4r4Protein phosphatase 4, regulatory subunit 4. (652 aa)
LOC110000867Uncharacterized protein. (427 aa)
LOC109999018Uncharacterized protein. (341 aa)
ppp2cbSerine/threonine-protein phosphatase. (309 aa)
LOC109984495Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (633 aa)
pabpn1Poly(A) binding protein, nuclear 1. (284 aa)
LOC109989838Uncharacterized protein. (443 aa)
ppp2caSerine/threonine-protein phosphatase. (309 aa)
LOC109984562Si:ch73-252i11.1. (848 aa)
ENSLBEP00000037135RRM domain-containing protein. (123 aa)
LOC109998490Uncharacterized protein. (224 aa)
upf1Uncharacterized protein. (1102 aa)
ENSLBEP00000037396Transmembrane protein 223. (195 aa)
sympkSymplekin. (1223 aa)
ppp2r5dSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (610 aa)
st13ST13 Hsp70 interacting protein. (518 aa)
LOC109987581Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (330 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (456 aa)
ENSLBEP00000038516Cleavage stimulation factor, 3' pre-RNA, subunit 2. (302 aa)
fip1l1FIP1 like 1b (S. cerevisiae). (551 aa)
ENSLBEP00000038739Uncharacterized protein. (93 aa)
cirbpRRM domain-containing protein. (183 aa)
LOC109976680DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (489 aa)
dazap1DAZ associated protein 1. (435 aa)
LOC109977373Uncharacterized protein. (1071 aa)
CPSF7RRM domain-containing protein. (458 aa)
LOC109982852Mago homolog, exon junction complex subunit. (123 aa)
GSPT1G1 to S phase transition 1. (587 aa)
LOC109996822RNA binding motif protein 14a. (537 aa)
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
LOC109980840Uncharacterized protein. (354 aa)
ENSLBEP00000001991Uncharacterized protein. (528 aa)
ENSLBEP00000002057CID domain-containing protein. (106 aa)
WDR33WD repeat domain 33. (975 aa)
LOC109989926JAZF zinc finger 1. (243 aa)
ENSLBEP00000002753Uncharacterized protein. (716 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1666 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1121 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
acin1SAP domain-containing protein. (1393 aa)
kiaa0232Zgc:158564. (1346 aa)
LOC109993470Serine/threonine-protein phosphatase. (338 aa)
rnf141Ring finger protein 141. (228 aa)
LOC109989975Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (453 aa)
hbs1lHBS1-like translational GTPase. (700 aa)
DDX39ADExD-box helicase 39A. (451 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1119 aa)
zc3h6Zinc finger CCCH-type containing 6. (963 aa)
ppp4r1WRNPLPNID domain-containing protein. (989 aa)
LOC109977434Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (482 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1468 aa)
LOC109992897Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (342 aa)
fnbp4Formin binding protein 4. (858 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3608 aa)
nedd1NEDD1 gamma-tubulin ring complex targeting factor. (664 aa)
dclre1aDNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (871 aa)
ENSLBEP00000005977Uncharacterized protein. (1298 aa)
ENSLBEP00000006036Uncharacterized protein. (262 aa)
LOC109993517Serine/threonine-protein phosphatase. (309 aa)
ENSLBEP00000006075DWNN domain-containing protein. (109 aa)
LOC109975586ADF-H domain-containing protein. (139 aa)
ncmapUncharacterized protein. (149 aa)
rbmx2RRM domain-containing protein. (349 aa)
ENSLBEP00000006864EST1_DNA_bind domain-containing protein. (695 aa)
PPP2R5CSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (486 aa)
LOC110005683RRM domain-containing protein. (268 aa)
casc3Casc3 exon junction complex subunit. (805 aa)
LOC109978929Uncharacterized protein. (641 aa)
nxf1Zgc:153681. (643 aa)
ENSLBEP00000007773CID domain-containing protein. (95 aa)
pih1d3PIH1 domain containing 3. (191 aa)
LOC109991822G1 to S phase transition 1, like. (576 aa)
LOC110002397Protein phosphatase 2, regulatory subunit B'', alpha. (1189 aa)
ENSLBEP00000008651Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (400 aa)
msi2Musashi RNA-binding protein 2a. (421 aa)
ENSLBEP00000011245YTH domain-containing protein. (528 aa)
msi1Musashi RNA binding protein 1. (349 aa)
JAZF1JAZF zinc finger 1b. (243 aa)
ppp2r5aSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (524 aa)
msl1MSL complex subunit 1b. (531 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
ENSLBEP00000013105Uncharacterized protein. (150 aa)
LOC109980928Poly(A) binding protein, cytoplasmic 1-like. (655 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (445 aa)
ppp2r2dSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
zc3h4Zinc finger CCCH-type containing 4. (993 aa)
czibCXXC motif containing zinc binding protein. (155 aa)
PPP2R2CSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (452 aa)
LOC109997000Zgc:193690. (487 aa)
ints11Integrator complex subunit 11. (591 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (746 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (274 aa)
NCBP1Nuclear cap binding protein subunit 1. (806 aa)
rngttPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (579 aa)
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (20%) [HD]