(49 nodes) Protein export network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000000610	Uncharacterized protein; Belongs to the heat shock protein 70 family. (635 aa)
	ENSLBEP00000000720	Uncharacterized protein; Belongs to the heat shock protein 70 family. (655 aa)
	immp1l	Mitochondrial inner membrane protease subunit. (172 aa)
	sec61b	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (94 aa)
	LOC109977484	Uncharacterized protein. (188 aa)
	LOC109975544	Heat shock protein 5; Belongs to the heat shock protein 70 family. (654 aa)
	ENSLBEP00000005736	Uncharacterized protein; Belongs to the heat shock protein 70 family. (642 aa)
	LOC110005608	Uncharacterized protein; Belongs to the heat shock protein 70 family. (671 aa)
	ENSLBEP00000007512	Uncharacterized protein. (124 aa)
	immp2l	Mitochondrial inner membrane protease subunit. (176 aa)
	ENSLBEP00000008484	SEC61 translocon gamma subunit. (157 aa)
	sec11a	Signal peptidase complex catalytic subunit SEC11. (179 aa)
	itfg2	Integrin alpha FG-GAP repeat containing 2. (437 aa)
	sec63	SEC63 homolog, protein translocation regulator. (754 aa)
	LOC110002425	Signal peptidase complex subunit 3. (215 aa)
	ENSLBEP00000012249	Uncharacterized protein. (490 aa)
	srpra	SRP receptor subunit alpha. (651 aa)
	srp68	Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (592 aa)
	ENSLBEP00000014437	Uncharacterized protein. (165 aa)
	spcs1	Signal peptidase complex subunit 1. (113 aa)
	TMEM19	Transmembrane protein 19. (290 aa)
	LOC110004569	Uncharacterized protein. (493 aa)
	LOC109979489	Protein yippee-like; Belongs to the yippee family. (120 aa)
	ENSLBEP00000015823	Uncharacterized protein. (551 aa)
	sec62	SEC62 homolog, preprotein translocation factor. (438 aa)
	LOC109983902	Plug_translocon domain-containing protein. (476 aa)
	spcs2	Signal peptidase complex subunit 2. (244 aa)
	SEC61A1	Plug_translocon domain-containing protein. (476 aa)
	LOC109989128	Protein yippee-like; Belongs to the yippee family. (119 aa)
	LOC109998827	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	ENSLBEP00000026357	Signal recognition particle 72. (233 aa)
	ENSLBEP00000026991	ANK_REP_REGION domain-containing protein. (188 aa)
	srp9	Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (86 aa)
	LOC109995520	OXA1L mitochondrial inner membrane protein. (456 aa)
	LOC110004759	Signal recognition particle 54 kDa protein. (504 aa)
	ENSLBEP00000027932	Uncharacterized protein. (342 aa)
	LOC109976588	Uncharacterized protein; Belongs to the heat shock protein 70 family. (654 aa)
	LOC109979846	SRP receptor subunit beta. (275 aa)
	LOC110004804	Cytochrome c oxidase assembly factor COX18. (376 aa)
	LOC109998413	Protein yippee-like; Belongs to the yippee family. (119 aa)
	srp14	Signal recognition particle 14. (110 aa)
	srp19	Signal recognition particle 19. (170 aa)
	LOC110002808	Uncharacterized protein; Belongs to the heat shock protein 70 family. (653 aa)
	LOC110002809	Uncharacterized protein; Belongs to the heat shock protein 70 family. (654 aa)
	ENSLBEP00000036456	Uncharacterized protein; Belongs to the heat shock protein 70 family. (617 aa)
	LOC109989823	Protein yippee-like; Belongs to the yippee family. (119 aa)
	YPEL5	Protein yippee-like; Belongs to the yippee family. (121 aa)
	ENSLBEP00000038776	Uncharacterized protein. (128 aa)
	ENSLBEP00000038778	Uncharacterized protein. (387 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000000610	LOC109983902	ENSLBEP00000000610	ENSLBEP00000020572	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000000610	SEC61A1	ENSLBEP00000000610	ENSLBEP00000022861	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000000610	sec63	ENSLBEP00000000610	ENSLBEP00000012040	Uncharacterized protein; Belongs to the heat shock protein 70 family.	SEC63 homolog, protein translocation regulator.	0.849
ENSLBEP00000000610	spcs2	ENSLBEP00000000610	ENSLBEP00000022528	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Signal peptidase complex subunit 2.	0.582
ENSLBEP00000000720	LOC109983902	ENSLBEP00000000720	ENSLBEP00000020572	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000000720	SEC61A1	ENSLBEP00000000720	ENSLBEP00000022861	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000000720	sec63	ENSLBEP00000000720	ENSLBEP00000012040	Uncharacterized protein; Belongs to the heat shock protein 70 family.	SEC63 homolog, protein translocation regulator.	0.849
ENSLBEP00000000720	spcs2	ENSLBEP00000000720	ENSLBEP00000022528	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Signal peptidase complex subunit 2.	0.582
ENSLBEP00000005736	LOC109983902	ENSLBEP00000005736	ENSLBEP00000020572	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000005736	SEC61A1	ENSLBEP00000005736	ENSLBEP00000022861	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000005736	sec63	ENSLBEP00000005736	ENSLBEP00000012040	Uncharacterized protein; Belongs to the heat shock protein 70 family.	SEC63 homolog, protein translocation regulator.	0.849
ENSLBEP00000005736	spcs2	ENSLBEP00000005736	ENSLBEP00000022528	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Signal peptidase complex subunit 2.	0.582
ENSLBEP00000007512	LOC109983902	ENSLBEP00000007512	ENSLBEP00000020572	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000007512	SEC61A1	ENSLBEP00000007512	ENSLBEP00000022861	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.546
ENSLBEP00000007512	sec63	ENSLBEP00000007512	ENSLBEP00000012040	Uncharacterized protein.	SEC63 homolog, protein translocation regulator.	0.849
ENSLBEP00000007512	spcs2	ENSLBEP00000007512	ENSLBEP00000022528	Uncharacterized protein.	Signal peptidase complex subunit 2.	0.582
ENSLBEP00000008484	LOC109977484	ENSLBEP00000008484	ENSLBEP00000004222	SEC61 translocon gamma subunit.	Uncharacterized protein.	0.580
ENSLBEP00000008484	LOC109979846	ENSLBEP00000008484	ENSLBEP00000028354	SEC61 translocon gamma subunit.	SRP receptor subunit beta.	0.666
ENSLBEP00000008484	LOC109983902	ENSLBEP00000008484	ENSLBEP00000020572	SEC61 translocon gamma subunit.	Plug_translocon domain-containing protein.	0.993
ENSLBEP00000008484	LOC109998827	ENSLBEP00000008484	ENSLBEP00000024434	SEC61 translocon gamma subunit.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.512