STRINGSTRING
accD accD pckA pckA gabD-1 gabD-1 gabT gabT purU-1 purU-1 fadB fadB tme tme APO66296.1 APO66296.1 fadA fadA fadJ fadJ APO66305.1 APO66305.1 ttuC-1 ttuC-1 APO66341.1 APO66341.1 gabD-2 gabD-2 APO66354.1 APO66354.1 APO66362.1 APO66362.1 acsA-1 acsA-1 APO66473.1 APO66473.1 iolA iolA APO66654.1 APO66654.1 APO66655.1 APO66655.1 APO66705.1 APO66705.1 ppdK ppdK APO66826.1 APO66826.1 etf-1 etf-1 APO67018.1 APO67018.1 APO67134.1 APO67134.1 APO67135.1 APO67135.1 birA birA APO67171.1 APO67171.1 APO67172.1 APO67172.1 APO67200.1 APO67200.1 accC-1 accC-1 accB-1 accB-1 ilvD ilvD gltA gltA pdhA pdhA pdhB pdhB pdhC pdhC lpdA lpdA lipA lipA APO67701.1 APO67701.1 citA citA lipB lipB pccA-1 pccA-1 pccB-1 pccB-1 icd icd dme dme fumC fumC fumA fumA APO67906.1 APO67906.1 APO68054.1 APO68054.1 ilvC ilvC ilvH ilvH ilvI ilvI APO68184.1 APO68184.1 APO68254.1 APO68254.1 APO68296.1 APO68296.1 APO68297.1 APO68297.1 ilvE ilvE APO68381.1 APO68381.1 APO68382.1 APO68382.1 leuA leuA APO68439.1 APO68439.1 lldD-1 lldD-1 IlvD-3 IlvD-3 APO68767.1 APO68767.1 APO69396.1 APO69396.1 etfB-1 etfB-1 etfA-1 etfA-1 hbdA hbdA accA accA APO69506.1 APO69506.1 sucB sucB sucA sucA sucD sucD sucC sucC mdh mdh sdhB sdhB sdhA sdhA sdhD sdhD sdhC sdhC acnA acnA leuC leuC tesB tesB APO69607.1 APO69607.1 APO69618.1 APO69618.1 phbB phbB phbA phbA pyc pyc leuD leuD leuB leuB acsA-2 acsA-2 APO69739.1 APO69739.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
accDacetyl-CoA carboxylase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA. (300 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (536 aa)
gabD-1Succinate-semialdehyde dehydrogenase (NADP(+)) 1; Protein involved in oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, metabolic process and oxidation-reduction process. (493 aa)
gabT4-aminobutyrate aminotransferase; Protein involved in catalytic activity, pyridoxal phosphate binding and gamma-aminobutyric acid metabolic process; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (426 aa)
purU-1Formyltetrahydrofolate deformylase 1; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (294 aa)
fadBenoyl-CoA hydratase; Protein involved in catalytic activity and metabolic process; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
tmeNADP-dependent malic enzyme; Protein involved in nucleotide binding, NAD binding and oxidation-reduction process. (760 aa)
APO66296.1acyl-CoA dehydrogenase protein; Protein involved in oxidoreductase activity, acting on the CH-CH group of donors, flavin adenine dinucleotide binding, metabolic process and oxidation-reduction process. (598 aa)
fadAacetyl-CoA C-acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
fadJFatty acid oxidation complex subunit alpha FadJ; Protein involved in nucleotide binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, coenzyme binding and oxidation-reduction process. (738 aa)
APO66305.13-hydroxyisobutyryl-CoA hydrolase; Protein involved in catalytic activity and metabolic process. (353 aa)
ttuC-1Trifunctional D-malate dehydrogenase/tartrate dehydrogenase/tartrate decarboxylase 1; Protein involved in oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, NAD binding and oxidation-reduction process. (357 aa)
APO66341.1Tartrate dehydrogenase/decarboxylase protein; Protein involved in oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, NAD binding and oxidation-reduction process. (347 aa)
gabD-2Succinate-semialdehyde dehydrogenase (NADP(+)) 2; Protein involved in oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, metabolic process and oxidation-reduction process. (497 aa)
APO66354.1Succinate-semialdehyde dehydrogenase (NADP(+)) protein; Protein involved in oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, metabolic process and oxidation-reduction process. (485 aa)
APO66362.1Aldehyde dehydrogenase (NAD(+)) protein; Protein involved in oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, metabolic process and oxidation-reduction process. (484 aa)
acsA-1acetyl-CoA synthetase 1; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (648 aa)
APO66473.1acetoacetyl-CoA synthetase protein; Protein involved in acetoacetate-CoA ligase activity and lipid metabolic process. (650 aa)
iolAMethylmalonate-semialdehyde dehydrogenase (acylating); Protein involved in oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, metabolic process and oxidation-reduction process. (498 aa)
APO66654.1acyl-CoA dehydrogenase protein; Protein involved in oxidoreductase activity, acting on the CH-CH group of donors, flavin adenine dinucleotide binding, metabolic process and oxidation-reduction process. (592 aa)
APO66655.1crotonase/enoyl-CoA hydratase family protein; Protein involved in catalytic activity and metabolic process. (250 aa)
APO66705.1Formate dehydrogenase protein; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. (399 aa)
ppdKPyruvate phosphate dikinase; Protein involved in catalytic activity, ligase activity and phosphorylation; Belongs to the PEP-utilizing enzyme family. (890 aa)
APO66826.1Protein involved in catalytic activity and metabolic process. (297 aa)
etf-1Electron transfer flavoprotein-ubiquinone oxidoreductase 1; Accepts electrons from ETF and reduces ubiquinone. (554 aa)
APO67018.12-isopropylmalate/homocitrate synthase family transferase protein; Protein involved in catalytic activity and leucine biosynthetic process; Belongs to the alpha-IPM synthase/homocitrate synthase family. (538 aa)
APO67134.1Phenylacetic acid degradation-related protein. (141 aa)
APO67135.1crotonase/enoyl-CoA hydratase family protein; Protein involved in catalytic activity and metabolic process; Belongs to the enoyl-CoA hydratase/isomerase family. (276 aa)
birAbiotin--(acetyl-CoA carboxylase) ligase; Protein involved in biotin-[acetyl-CoA-carboxylase] ligase activity and protein modification process. (254 aa)
APO67171.1Protein involved in hydrolase activity. (556 aa)
APO67172.1methylmalonyl-CoA epimerase protein. (134 aa)
APO67200.1acyl-CoA dehydrogenase protein; Protein involved in oxidoreductase activity, acting on the CH-CH group of donors, metabolic process and oxidation-reduction process. (549 aa)
accC-1acetyl-CoA carboxylase biotin carboxylase subunit AccC 1; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (448 aa)
accB-1acetyl-CoA carboxylase biotin carboxyl carrier subunit AccB 1; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (158 aa)
ilvDDihydroxy-acid dehydratase; Protein involved in catalytic activity and metabolic process; Belongs to the IlvD/Edd family. (612 aa)
gltACitrate synthase; Protein involved in transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer and cellular carbohydrate metabolic process; Belongs to the citrate synthase family. (429 aa)
pdhAPyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (348 aa)
pdhBPyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (458 aa)
pdhCPyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (461 aa)
lpdADihydrolipoyl dehydrogenase; Protein involved in oxidoreductase activity, flavin adenine dinucleotide binding and oxidation-reduction process. (482 aa)
lipALipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (323 aa)
APO67701.1Citrate synthase protein; Protein involved in transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer and cellular carbohydrate metabolic process. (381 aa)
citACitrate synthase; Protein involved in transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer and cellular carbohydrate metabolic process; Belongs to the citrate synthase family. (361 aa)
lipBOctanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. (237 aa)
pccA-1propionyl-CoA carboxylase subunit alpha 1; Protein involved in ATP binding, ligase activity and metabolic process. (669 aa)
pccB-1propionyl-CoA carboxylase beta subunit 1; Protein involved in ligase activity. (510 aa)
icdIsocitrate dehydrogenase (NADP(+)); Protein involved in oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor and oxidation-reduction process; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (404 aa)
dmeMalic enzyme; Protein involved in nucleotide binding, NAD binding and oxidation-reduction process. (770 aa)
fumCFumarate hydratase class 2; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (463 aa)
fumAFumarate hydratase class 1; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (535 aa)
APO67906.13-hydroxyisobutyrate dehydrogenase-related protein; Protein involved in nucleotide binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, coenzyme binding and oxidation-reduction process. (289 aa)
APO68054.1crotonase/enoyl-CoA hydratase family protein; Protein involved in catalytic activity and metabolic process. (329 aa)
ilvCKetol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (339 aa)
ilvHAcetolactate synthase 3 small subunit; Protein involved in acetolactate synthase activity and branched chain family amino acid biosynthetic process. (190 aa)
ilvIAcetolactate synthase 3 large subunit; Protein involved in magnesium ion binding, acetolactate synthase activity, thiamine pyrophosphate binding, flavin adenine dinucleotide binding and branched chain family amino acid biosynthetic process. (585 aa)
APO68184.1D-lactate dehydrogenase (cytochrome) protein; Protein involved in catalytic activity, oxidoreductase activity, flavin adenine dinucleotide binding and oxidation-reduction process. (470 aa)
APO68254.1Protein involved in thiamine pyrophosphate binding; Belongs to the TPP enzyme family. (552 aa)
APO68296.1crotonase/enoyl-CoA hydratase family protein; Protein involved in catalytic activity and metabolic process. (257 aa)
APO68297.1Coenzyme A transferase protein; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family. (537 aa)
ilvEBranched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (297 aa)
APO68381.1MaoC-like dehydratase protein; Overlaps another CDS with the same product name; Protein involved in oxidoreductase activity and metabolic process. (153 aa)
APO68382.1MaoC-like dehydratase protein; Overlaps another CDS with the same product name; Protein involved in oxidoreductase activity and metabolic process. (155 aa)
leuA2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. (571 aa)
APO68439.1Omega amino acid--pyruvate aminotransferase protein; Protein involved in catalytic activity and pyridoxal phosphate binding; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (441 aa)
lldD-1L-lactate dehydrogenase (cytochrome) 1; Protein involved in catalytic activity, oxidoreductase activity and oxidation-reduction process. (380 aa)
IlvD-3Dihydroxy-acid/6-phosphogluconate dehydratase protein; Protein involved in catalytic activity and metabolic process; Belongs to the IlvD/Edd family. (594 aa)
APO68767.1Sulfur acquisition oxidoreductase SfnB family protein; Protein involved in oxidoreductase activity, acting on the CH-CH group of donors, flavin adenine dinucleotide binding, metabolic process and oxidation-reduction process. (358 aa)
APO69396.1AMP-dependent synthetase/ligase protein; Protein involved in catalytic activity and metabolic process. (546 aa)
etfB-1Electron transport flavoprotein subunit beta 1; Protein involved in electron carrier activity. (249 aa)
etfA-1Electron-transport flavoprotein subunit alpha 1; Protein involved in electron carrier activity and flavin adenine dinucleotide binding. (309 aa)
hbdA3-hydroxybutyryl-CoA dehydrogenase; Protein involved in nucleotide binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, coenzyme binding and oxidation-reduction process. (293 aa)
accAacetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (318 aa)
APO69506.1Dihydrolipoamide dehydrogenase protein; Protein involved in oxidoreductase activity, flavin adenine dinucleotide binding and oxidation-reduction process. (468 aa)
sucBDihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (420 aa)
sucA2-oxoglutarate dehydrogenase E1 component; Protein involved in oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamine pyrophosphate binding, tricarboxylic acid cycle and oxidation-reduction process. (994 aa)
sucDsuccinyl-CoA synthetase (ADP-forming) subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (301 aa)
sucCsuccinyl-CoA synthetase (ADP-forming) subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (398 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (320 aa)
sdhBSuccinate dehydrogenase iron-sulfur subunit; Protein involved in electron carrier activity, iron-sulfur cluster binding and oxidation-reduction process; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Protein involved in oxidoreductase activity, flavin adenine dinucleotide binding and oxidation-reduction process; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (613 aa)
sdhDProtein involved in succinate dehydrogenase activity, heme binding and tricarboxylic acid cycle. (126 aa)
sdhCSuccinate dehydrogenase cytochrome b556 subunit; Protein involved in succinate dehydrogenase activity and tricarboxylic acid cycle. (131 aa)
acnAAconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (896 aa)
leuC3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (469 aa)
tesBacyl-CoA thioesterase 2; Protein involved in acyl-CoA hydrolase activity and acyl-CoA metabolic process. (294 aa)
APO69607.1Aldehyde dehydrogenase (NAD(+)) protein; Protein involved in oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, metabolic process and oxidation-reduction process. (512 aa)
APO69618.1acyl-CoA dehydrogenase protein; Protein involved in oxidoreductase activity, acting on the CH-CH group of donors, flavin adenine dinucleotide binding, metabolic process and oxidation-reduction process. (393 aa)
phbBacetoacetyl-CoA reductase; Protein involved in nucleotide binding, poly-hydroxybutyrate biosynthetic process and oxidation-reduction process. (241 aa)
phbAacetyl-CoA acetyltransferase; Protein involved in transferase activity, transferring acyl groups other than amino-acyl groups and metabolic process; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
pycPyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1154 aa)
leuD3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (202 aa)
leuB3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (370 aa)
acsA-2acetyl-CoA synthetase 2; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (651 aa)
APO69739.1propionyl-CoA ligase protein; Protein involved in catalytic activity and metabolic process. (636 aa)
Your Current Organism:
Rhizobium gallicum
NCBI taxonomy Id: 56730
Other names: R. gallicum, bacterium ISSDS-850, strain R602sp
Server load: low (22%) [HD]