(22 nodes) Mixed, incl. Glycosyltransferase 2-like, and Glycosyl transferase, family 1 network (Syntrophus aciditrophicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SYN_00579	NAD(FAD)-utilizing dehydrogenases. (550 aa)
	gmd	GDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (344 aa)
	fcl	GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (322 aa)
	SYN_00586	Hypothetical membrane protein. (101 aa)
	SYN_00587	Hypothetical membrane protein. (140 aa)
	SYN_00817	Glycosyltransferase. (415 aa)
	SYN_00818	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase. (332 aa)
	SYN_00819	Glycosyltransferase involved in cell wall biogenesis. (264 aa)
	SYN_00820	Mannosyltransferase. (397 aa)
	SYN_00821	Glycosyltransferase. (332 aa)
	SYN_00822	Glycosyltransferase involved in cell wall biogenesis. (263 aa)
	SYN_00823	Glycosyltransferase. (406 aa)
	SYN_00824	ABC transporter ATP-binding protein. (428 aa)
	SYN_00825	O-antigen export system permease protein. (273 aa)
	SYN_00826	SAM-dependent methyltransferase. (261 aa)
	SYN_00827	Perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)
	SYN_00828	Hypothetical cytosolic protein. (147 aa)
	SYN_00829	Glycosyltransferase involved in cell wall biogenesis. (308 aa)
	SYN_00832	Hypothetical cytosolic protein. (70 aa)
	SYN_02655	ABC-type polysaccharide/polyol phosphate export systems, permease component. (295 aa)
	SYN_02656	ABC-type polysaccharide/polyol phosphate transport protein, ATPase component. (455 aa)
	SYN_03712	Hypothetical cytosolic protein. (128 aa)

Your Current Organism:

Syntrophus aciditrophicus

NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SYN_00586	SYN_00587	SYN_00586	SYN_00587	Hypothetical membrane protein.	Hypothetical membrane protein.	0.949
SYN_00586	fcl	SYN_00586	SYN_00585	Hypothetical membrane protein.	GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.	0.561
SYN_00586	gmd	SYN_00586	SYN_00584	Hypothetical membrane protein.	GDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.	0.540
SYN_00587	SYN_00586	SYN_00587	SYN_00586	Hypothetical membrane protein.	Hypothetical membrane protein.	0.949
SYN_00587	fcl	SYN_00587	SYN_00585	Hypothetical membrane protein.	GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.	0.561
SYN_00587	gmd	SYN_00587	SYN_00584	Hypothetical membrane protein.	GDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.	0.540
SYN_00817	SYN_00823	SYN_00817	SYN_00823	Glycosyltransferase.	Glycosyltransferase.	0.695
SYN_00817	SYN_00829	SYN_00817	SYN_00829	Glycosyltransferase.	Glycosyltransferase involved in cell wall biogenesis.	0.638
SYN_00818	SYN_00819	SYN_00818	SYN_00819	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	Glycosyltransferase involved in cell wall biogenesis.	0.786
SYN_00818	SYN_00820	SYN_00818	SYN_00820	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	Mannosyltransferase.	0.888
SYN_00818	SYN_00821	SYN_00818	SYN_00821	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	Glycosyltransferase.	0.692
SYN_00818	SYN_00822	SYN_00818	SYN_00822	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	Glycosyltransferase involved in cell wall biogenesis.	0.654
SYN_00818	SYN_00823	SYN_00818	SYN_00823	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	Glycosyltransferase.	0.662
SYN_00818	SYN_00824	SYN_00818	SYN_00824	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	ABC transporter ATP-binding protein.	0.504
SYN_00818	SYN_00825	SYN_00818	SYN_00825	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	O-antigen export system permease protein.	0.484
SYN_00818	SYN_00826	SYN_00818	SYN_00826	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	SAM-dependent methyltransferase.	0.408
SYN_00818	SYN_00829	SYN_00818	SYN_00829	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	Glycosyltransferase involved in cell wall biogenesis.	0.502
SYN_00819	SYN_00818	SYN_00819	SYN_00818	Glycosyltransferase involved in cell wall biogenesis.	Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.	0.786
SYN_00819	SYN_00820	SYN_00819	SYN_00820	Glycosyltransferase involved in cell wall biogenesis.	Mannosyltransferase.	0.786
SYN_00819	SYN_00821	SYN_00819	SYN_00821	Glycosyltransferase involved in cell wall biogenesis.	Glycosyltransferase.	0.906