(16 nodes) Mixed, incl. Import into cell, and Ribosomal small subunit binding network (Syntrophus aciditrophicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SYN_00938	Phosphomannomutase. (450 aa)
	SYN_00941	ATP-binding protein; Displays ATPase and GTPase activities. (307 aa)
	SYN_00942	Serine kinase of the HPr protein, regulates carbohydrate metabolism. (300 aa)
	SYN_00943	Nitrogen regulatory IIA protein. (153 aa)
	hpf	Ribosome-associated factor Y; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (209 aa)
	SYN_01727	PTS system mannose/fructose/sorbose family IID component protein. (262 aa)
	SYN_01728	Phosphocarrier protein HPr. (89 aa)
	SYN_01729	Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). (594 aa)
	SYN_02842	Hypothetical cytosolic protein. (62 aa)
	SYN_02843	Hypothetical cytosolic protein. (62 aa)
	SYN_02844	Pts system fructose IIA component. (155 aa)
	SYN_02845	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB. (187 aa)
	SYN_02846	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC. (231 aa)
	SYN_02847	Acetyltransferase GNAT family. (175 aa)
	SYN_02961	Hypothetical cytosolic protein. (701 aa)
	SYN_03119	Mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase; Bifunctional; Belongs to the mannose-6-phosphate isomerase type 2 family. (509 aa)

Your Current Organism:

Syntrophus aciditrophicus

NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SYN_00938	SYN_01727	SYN_00938	SYN_01727	Phosphomannomutase.	PTS system mannose/fructose/sorbose family IID component protein.	0.902
SYN_00938	SYN_02844	SYN_00938	SYN_02844	Phosphomannomutase.	Pts system fructose IIA component.	0.905
SYN_00938	SYN_02846	SYN_00938	SYN_02846	Phosphomannomutase.	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.	0.900
SYN_00938	SYN_03119	SYN_00938	SYN_03119	Phosphomannomutase.	Mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase; Bifunctional; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.976
SYN_00941	SYN_00942	SYN_00941	SYN_00942	ATP-binding protein; Displays ATPase and GTPase activities.	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	0.824
SYN_00941	SYN_00943	SYN_00941	SYN_00943	ATP-binding protein; Displays ATPase and GTPase activities.	Nitrogen regulatory IIA protein.	0.899
SYN_00941	SYN_02844	SYN_00941	SYN_02844	ATP-binding protein; Displays ATPase and GTPase activities.	Pts system fructose IIA component.	0.409
SYN_00941	SYN_02847	SYN_00941	SYN_02847	ATP-binding protein; Displays ATPase and GTPase activities.	Acetyltransferase GNAT family.	0.402
SYN_00941	SYN_02961	SYN_00941	SYN_02961	ATP-binding protein; Displays ATPase and GTPase activities.	Hypothetical cytosolic protein.	0.900
SYN_00941	hpf	SYN_00941	SYN_00944	ATP-binding protein; Displays ATPase and GTPase activities.	Ribosome-associated factor Y; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.733
SYN_00942	SYN_00941	SYN_00942	SYN_00941	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	ATP-binding protein; Displays ATPase and GTPase activities.	0.824
SYN_00942	SYN_00943	SYN_00942	SYN_00943	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	Nitrogen regulatory IIA protein.	0.754
SYN_00942	SYN_01728	SYN_00942	SYN_01728	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	Phosphocarrier protein HPr.	0.847
SYN_00942	SYN_01729	SYN_00942	SYN_01729	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).	0.791
SYN_00942	SYN_02844	SYN_00942	SYN_02844	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	Pts system fructose IIA component.	0.507
SYN_00942	SYN_02845	SYN_00942	SYN_02845	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB.	0.415
SYN_00942	hpf	SYN_00942	SYN_00944	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	Ribosome-associated factor Y; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.	0.583
SYN_00943	SYN_00941	SYN_00943	SYN_00941	Nitrogen regulatory IIA protein.	ATP-binding protein; Displays ATPase and GTPase activities.	0.899
SYN_00943	SYN_00942	SYN_00943	SYN_00942	Nitrogen regulatory IIA protein.	Serine kinase of the HPr protein, regulates carbohydrate metabolism.	0.754
SYN_00943	SYN_01727	SYN_00943	SYN_01727	Nitrogen regulatory IIA protein.	PTS system mannose/fructose/sorbose family IID component protein.	0.641