STRINGSTRING
SYN_00125 SYN_00125 SYN_03823 SYN_03823 SYN_03385 SYN_03385 SYN_03207 SYN_03207 SYN_03206 SYN_03206 SYN_03160 SYN_03160 SYN_03153 SYN_03153 SYN_03124 SYN_03124 SYN_03123 SYN_03123 SYN_03067 SYN_03067 SYN_03045 SYN_03045 SYN_02981 SYN_02981 ruvA ruvA ruvB ruvB SYN_02960 SYN_02960 SYN_02908 SYN_02908 SYN_02902 SYN_02902 SYN_02867 SYN_02867 SYN_02860 SYN_02860 SYN_02859 SYN_02859 SYN_02841 SYN_02841 SYN_02840 SYN_02840 SYN_02839 SYN_02839 fliP fliP fliQ fliQ SYN_02833 SYN_02833 flhA flhA SYN_02829 SYN_02829 SYN_02828 SYN_02828 SYN_02818 SYN_02818 SYN_02815 SYN_02815 SYN_02814 SYN_02814 flgK flgK csrA csrA fliW fliW SYN_02806 SYN_02806 SYN_02800 SYN_02800 topA topA prfB prfB SYN_02783 SYN_02783 mfd mfd SYN_02754 SYN_02754 minC minC SYN_02691 SYN_02691 SYN_02599 SYN_02599 SYN_02587 SYN_02587 SYN_02586 SYN_02586 SYN_02584 SYN_02584 recC recC recB recB recD recD SYN_02537 SYN_02537 SYN_02504 SYN_02504 SYN_02487 SYN_02487 SYN_02477 SYN_02477 SYN_02475 SYN_02475 cas1-2 cas1-2 cas2-3 cas2-3 SYN_02452 SYN_02452 SYN_02437 SYN_02437 SYN_02430 SYN_02430 uppP uppP SYN_02375 SYN_02375 SYN_02260 SYN_02260 cas1 cas1 cas2-2 cas2-2 cas2 cas2 SYN_02235 SYN_02235 SYN_02229 SYN_02229 SYN_02193 SYN_02193 SYN_02128 SYN_02128 SYN_02126 SYN_02126 SYN_02125 SYN_02125 SYN_02071 SYN_02071 SYN_02069 SYN_02069 SYN_02068 SYN_02068 gyrB gyrB gyrA gyrA SYN_02043 SYN_02043 rlpA rlpA SYN_01990 SYN_01990 SYN_01929 SYN_01929 SYN_01912 SYN_01912 SYN_01911 SYN_01911 SYN_01852 SYN_01852 SYN_01849 SYN_01849 SYN_01844 SYN_01844 SYN_01827 SYN_01827 SYN_01822 SYN_01822 SYN_01815 SYN_01815 prfA prfA murA murA SYN_01775 SYN_01775 SYN_01774 SYN_01774 SYN_01773 SYN_01773 SYN_01757 SYN_01757 SYN_01756 SYN_01756 murB murB murC murC murG murG SYN_01745 SYN_01745 murD murD mraY mraY murF murF murE murE mltG mltG rplT rplT lptD lptD SYN_01569 SYN_01569 ddl-2 ddl-2 SYN_01475 SYN_01475 SYN_01474 SYN_01474 SYN_01414 SYN_01414 mtgA mtgA rsfS rsfS priA priA SYN_01298 SYN_01298 SYN_01266 SYN_01266 SYN_01265 SYN_01265 iscS iscS SYN_01228 SYN_01228 SYN_01185 SYN_01185 SYN_01183 SYN_01183 SYN_01182 SYN_01182 SYN_01146 SYN_01146 SYN_01096 SYN_01096 recD2 recD2 SYN_01015 SYN_01015 SYN_01013 SYN_01013 SYN_00947 SYN_00947 SYN_00939 SYN_00939 SYN_00921 SYN_00921 frr frr prfC prfC SYN_00766 SYN_00766 SYN_00752 SYN_00752 SYN_00708 SYN_00708 SYN_00674 SYN_00674 SYN_00640 SYN_00640 SYN_00635 SYN_00635 SYN_00634 SYN_00634 SYN_00603 SYN_00603 SYN_00602 SYN_00602 engB engB SYN_00581 SYN_00581 SYN_00569 SYN_00569 mrdB mrdB SYN_00535 SYN_00535 SYN_00486 SYN_00486 SYN_00480 SYN_00480 SYN_00452 SYN_00452 SYN_00449 SYN_00449 ftsZ ftsZ ddl ddl SYN_00410 SYN_00410 SYN_00383 SYN_00383 SYN_00337 SYN_00337 murI murI SYN_00178 SYN_00178 SYN_00150 SYN_00150 SYN_00149 SYN_00149 SYN_00129 SYN_00129 SYN_00126 SYN_00126 murJ murJ SYN_00081 SYN_00081 SYN_00051 SYN_00051 bamD bamD SYN_00017 SYN_00017 SYN_00014 SYN_00014
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SYN_00125Pili retraction protein. (360 aa)
SYN_03823Hypothetical cytosolic protein. (63 aa)
SYN_03385Heme insertion protein; Bacterial system II. (271 aa)
SYN_03207Flagellar biosynthetic protein. (130 aa)
SYN_03206ABC transporter ATP-binding protein. (266 aa)
SYN_03160Hypothetical cytosolic protein. (66 aa)
SYN_03153ATPase related to magnesium chelatase subunit. (509 aa)
SYN_03124Hypothetical cytosolic protein. (238 aa)
SYN_03123ATPases involved in chromosome partitioning. (142 aa)
SYN_03067Hypothetical membrane protein. (294 aa)
SYN_03045Cell division protein; Essential cell division protein. (281 aa)
SYN_02981Hypothetical cytosolic protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. (93 aa)
ruvAHolliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (204 aa)
ruvBHolliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa)
SYN_02960UDP-N-acetylglucosamine pyrophosphorylase. (452 aa)
SYN_02908ATP-dependent DNA helicase. (606 aa)
SYN_02902Predicted phosphotransferase related to Ser/Thr protein kinases. (357 aa)
SYN_02867ABC transporter system permease involved in Fe-S cluster assembly. (306 aa)
SYN_02860Membrane-bound lytic murein transglycosylase. (475 aa)
SYN_02859DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (90 aa)
SYN_02841Flagellar hook-length control protein. (584 aa)
SYN_02840Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. (220 aa)
SYN_02839Flagellar hook protein. (518 aa)
fliPFlagellar biosynthetic protein; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (262 aa)
fliQFlagellar biosynthetic protein; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa)
SYN_02833Flagellar biosynthetic protein; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (259 aa)
flhAFlagellar biosynthesis protein; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (691 aa)
SYN_02829Flagellar biosynthesis protein. (390 aa)
SYN_02828Flagellar synthesis regulator. (317 aa)
SYN_02818Flagellar basal body P-ring biosynthesis protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (244 aa)
SYN_02815Peptidoglycan hydrolase. (111 aa)
SYN_02814Negative regulator of flagellin synthesis. (103 aa)
flgKFlagellar hook-associated protein 1. (463 aa)
csrACarbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (79 aa)
fliWTransmembrane protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. (158 aa)
SYN_02806Flagellin-specific chaperone. (174 aa)
SYN_02800Lytic transglycosylase. (268 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (769 aa)
prfBBacterial peptide Chain Release Factor 2 (RF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (279 aa)
SYN_02783Soluble lytic murein transglycosylase. (217 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1202 aa)
SYN_02754ATPases involved in DNA repair. (881 aa)
minCCell division inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. (259 aa)
SYN_02691Kid repeat protein. (144 aa)
SYN_02599Superfamily I DNA and RNA helicase. (287 aa)
SYN_02587acyl-CoA dehydrogenase, short-chain specific; Mediates the conversion of cyclohex-1-ene-1-carbonyl-CoA into (E)-2-cyclohex-1,5-diene-1-carbonyl-CoA in biosynthesis of cyclohexane- 1-carboxylate, a by-product produced during fermentation of benzoate and crotonate to acetate. Also able to further convert (E)-2-cyclohex- 1,5-diene-1-carbonyl-CoA to benzoyl-CoA. (414 aa)
SYN_02586acyl-CoA dehydrogenase, medium-chain specific; Mediates the conversion of cyclohexane-1-carbonyl-CoA into cyclohex-1-ene-1-carbonyl-CoA in biosynthesis of cyclohexane-1- carboxylate, a by-product produced during fermentation of benzoate and crotonate to acetate. (384 aa)
SYN_02584Superfamily II DNA helicase. (619 aa)
recCExodeoxyribonuclease V gamma chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repa [...] (1113 aa)
recBExodeoxyribonuclease V beta chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repai [...] (1230 aa)
recDExodeoxyribonuclease V alpha chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repa [...] (670 aa)
SYN_02537uvrD/rep helicase. (657 aa)
SYN_02504Membrane-bound lytic murein transglycosylase A. (452 aa)
SYN_02487Peptidyl-prolyl cis-trans isomerase. (322 aa)
SYN_02477Hypothetical cytosolic protein. (256 aa)
SYN_02475Hypothetical cytosolic protein. (291 aa)
cas1-2Hypothetical cytosolic protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (343 aa)
cas2-3Hypothetical cytosolic protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (96 aa)
SYN_02452nifU-like domain protein. (73 aa)
SYN_02437UDP-N-acetylglucosamine pyrophosphorylase. (258 aa)
SYN_02430ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (423 aa)
uppPUncharacterized bacitracin resistance protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (343 aa)
SYN_02375Hypothetical membrane protein. (190 aa)
SYN_02260D-alanyl-D-alanine serine-type carboxypeptidase; Belongs to the peptidase S11 family. (310 aa)
cas1Uncharacterized protein predicted to be involved in DNA repair; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (386 aa)
cas2-2Hypothetical cytosolic protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (91 aa)
cas2Hypothetical cytosolic protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (92 aa)
SYN_02235Hypothetical cytosolic protein. (341 aa)
SYN_02229DNA damage inducible protein. (89 aa)
SYN_02193Hypothetical cytosolic protein. (380 aa)
SYN_02128acyl-CoA dehydrogenase, long-chain specific. (389 aa)
SYN_02126Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (394 aa)
SYN_02125iscU protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (274 aa)
SYN_02071Swf/snf family helicase. (1407 aa)
SYN_02069ABC-type transport system involved in resistance to organic solvents, ATPase component. (264 aa)
SYN_02068Paraquat-inducible protein B. (328 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (800 aa)
gyrADNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (833 aa)
SYN_02043Hypothetical membrane protein. (258 aa)
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (150 aa)
SYN_01990ATPase, AAA family. (478 aa)
SYN_01929ATP-dependent RNA helicase. (413 aa)
SYN_01912Nuclease. (817 aa)
SYN_01911uvrD/rep helicase; Belongs to the helicase family. UvrD subfamily. (968 aa)
SYN_01852Snf2-related protein with C-terminal Helicase. (1178 aa)
SYN_01849ATP-dependent DNA helicase. (696 aa)
SYN_01844Hypothetical cytosolic protein. (592 aa)
SYN_01827SNF2-related:Helicase, C-terminal:type III restriction enzyme. (1090 aa)
SYN_01822ATPase. (713 aa)
SYN_01815Thiol:disulfide interchange protein. (238 aa)
prfABacterial peptide chain release factor 1 (rf-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (357 aa)
murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (417 aa)
SYN_01775Pili assembly protein. (183 aa)
SYN_01774Pili assembly protein. (236 aa)
SYN_01773Hypothetical exported protein. (165 aa)
SYN_01757Hypothetical membrane protein. (375 aa)
SYN_01756Hypothetical membrane protein. (401 aa)
murBUDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (312 aa)
murCUDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (480 aa)
murGUndecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (361 aa)
SYN_01745Cell division protein; Belongs to the SEDS family. (390 aa)
murDUDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (453 aa)
mraYphospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (359 aa)
murFUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (475 aa)
murEUDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (509 aa)
mltG4-amino-4-deoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (358 aa)
rplTLSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (768 aa)
SYN_01569Outer membrane protein. (176 aa)
ddl-2D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (352 aa)
SYN_01475Hypothetical membrane protein. (196 aa)
SYN_01474Hypothetical cytosolic protein. (146 aa)
SYN_01414Tetratricopeptide repeat family protein. (277 aa)
mtgAMonofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. (313 aa)
rsfSIojap protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (118 aa)
priAPrimosomal protein N' - superfamily II helicase; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (809 aa)
SYN_01298Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. (572 aa)
SYN_01266Surface lipoprotein. (349 aa)
SYN_01265Toluene tolerance protein. (198 aa)
iscSCysteine desulfurase / selenocysteine lyase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (390 aa)
SYN_01228DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa)
SYN_01185Iron-sulfur cluster assembly/repair protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (297 aa)
SYN_01183nifU -like protein involved in Fe-S cluster formation. (238 aa)
SYN_01182nifU -like protein involved in Fe-S cluster formation with 2Fe-2S domain; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (229 aa)
SYN_01146acyl-CoA dehydrogenase. (381 aa)
SYN_01096Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase. (540 aa)
recD2Exodeoxyribonuclease V alpha chain; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (753 aa)
SYN_01015Single-stranded nucleic acid binding domain. (296 aa)
SYN_01013Hypothetical cytosolic protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. (74 aa)
SYN_00947Organic solvent tolerance protein. (197 aa)
SYN_00939GTP-binding protein TypA/BipA. (602 aa)
SYN_00921Outer membrane protein. (885 aa)
frrRibosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (185 aa)
prfCBacterial peptide Chain Release Factor 3 (RF-3); Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (529 aa)
SYN_00766RNA binding protein; Belongs to the UPF0109 family. (81 aa)
SYN_00752Hypothetical RNA binding protein. (108 aa)
SYN_00708RNA-binding protein; Belongs to the UPF0109 family. (81 aa)
SYN_00674ATPase. (496 aa)
SYN_00640Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (454 aa)
SYN_00635Formate dehydrogenase major subunit; Cytochrome b. (195 aa)
SYN_00634Formate dehydrogenase major subunit; Cytochrome b; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (811 aa)
SYN_00603Formate dehydrogenase major subunit; Cytochrome b; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (830 aa)
SYN_00602Formate dehydrogenase major subunit; Cytochrome b. (186 aa)
engBGTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (196 aa)
SYN_00581Peptide chain release factor. (136 aa)
SYN_00569Predicted ATPase protein with chaperone activity. (494 aa)
mrdBRod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (369 aa)
SYN_00535LemA family protein. (191 aa)
SYN_00486Hypothetical cytosolic protein. (367 aa)
SYN_00480acyl-CoA dehydrogenase, short-chain specific. (383 aa)
SYN_00452Hypothetical membrane protein. (395 aa)
SYN_00449Lytic transglycosylase -like protein. (215 aa)
ftsZCell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (384 aa)
ddlD-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (355 aa)
SYN_00410ABC-type transport system, ATP-binding component. (248 aa)
SYN_00383Dead/deah box helicase. (840 aa)
SYN_00337Hypothetical cytosolic protein. (64 aa)
murIGlutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. (270 aa)
SYN_00178Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. (525 aa)
SYN_00150Heme export protein apocytochrome heme-lyase. (282 aa)
SYN_00149Heme export protein. (464 aa)
SYN_00129Nucleoside-diphosphate-sugar epimerase. (320 aa)
SYN_00126Pili retraction protein. (404 aa)
murJVirulence factor protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (527 aa)
SYN_00081Iron-sulfur cluster assembly/repair protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (295 aa)
SYN_00051Predicted ATPase with chaperone activity. (467 aa)
bamDLipoprotein, ComL family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (239 aa)
SYN_00017Superfamily II DNA/RNA helicase, SNF2 family. (1193 aa)
SYN_00014Protein translocase subunit; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. (148 aa)
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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