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| | SYN_01363 | Adenylate and guanylate cyclase catalytic domain protein. (334 aa) |
| | uvrC | Nuclease subunit of the excinuclease complex; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (618 aa) |
| | SYN_01314 | nucleotidyltransferase/DNA polymerase involved in DNA repair. (103 aa) |
| | SYN_01313 | Hypothetical cytosolic protein; Belongs to the SOS response-associated peptidase family. (207 aa) |
| | SYN_01292 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (133 aa) |
| | SYN_01291 | Signal transduction histidine kinase with PAS domain. (827 aa) |
| | SYN_01236 | Methyl-accepting chemotaxis protein. (688 aa) |
| | SYN_01195 | Coenzyme F390 synthetase / phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (434 aa) |
| | SYN_01178 | Response regulator receiver domain. (125 aa) |
| | SYN_01100 | Coenzyme F390 Synthetase / phenylacetate-coenzyme A ligase. (490 aa) |
| | SYN_01094 | Signal transduction histidine kinase. (614 aa) |
| | SYN_01093 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (456 aa) |
| | SYN_01090 | Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains. (535 aa) |
| | SYN_01079 | Ggdef family protein / response regulator receiver domain. (498 aa) |
| | SYN_01078 | Response regulator receiver domain. (135 aa) |
| | SYN_01077 | Sensor proteinLuxQ. (955 aa) |
| | SYN_01028 | Bacterial regulatory protein, LuxR family. (310 aa) |
| | SYN_00997 | carD-like transcriptional regulator. (161 aa) |
| | radA | DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (538 aa) |
| | SYN_00981 | Response regulator with a winged-helix DNA-binding domain. (245 aa) |
| | SYN_00978 | Methyl-accepting chemotaxis protein domain. (223 aa) |
| | SYN_00977 | Methyl-accepting chemotaxis protein. (467 aa) |
| | SYN_00112 | Sensory domain linked to a LuxR family regulatory protein. (939 aa) |
| | SYN_00061 | Phosphate regulon sensor protein. (583 aa) |
| | SYN_00034 | Response regulator with a winged-helix DNA-binding domain. (147 aa) |
| | SYN_00010 | ATPase. (397 aa) |
| | SYN_00975 | Chemotaxis protein. (169 aa) |
| | SYN_00974 | Response regulator CheY-like receiver domain. (152 aa) |
| | SYN_00973 | Sigma-54 dependent transcriptional regulator. (472 aa) |
| | SYN_00971 | Methyl-accepting chemotaxis protein. (648 aa) |
| | SYN_00968 | HD domain protein with metal dependent phosphohydrolase. (281 aa) |
| | SYN_00967 | Chemotaxis protein. (145 aa) |
| | cheB2 | Protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (343 aa) |
| | SYN_00963 | Chemotaxis protein. (735 aa) |
| | SYN_00962 | Chemotaxis protein. (126 aa) |
| | SYN_00942 | Serine kinase of the HPr protein, regulates carbohydrate metabolism. (300 aa) |
| | SYN_00930 | Predicted signal transduction protein. (293 aa) |
| | SYN_00929 | Sensory transduction protein kinase. (491 aa) |
| | SYN_00882 | Signal transduction histidine kinase. (652 aa) |
| | lon | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (790 aa) |
| | SYN_00776 | Signal transduction histidine kinase. (582 aa) |
| | SYN_00715 | Sensory domain linked to a LuxR regulatory protein. (716 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (696 aa) |
| | SYN_00592 | Hypothetical membrane protein. (256 aa) |
| | SYN_00591 | Thioredoxin peroxidase. (204 aa) |
| | SYN_00590 | Two-component system response regulator. (485 aa) |
| | SYN_00568 | Signal transduction histidine kinase with reciever domain protein. (649 aa) |
| | SYN_00566 | Sensory transduction protein with PAS domain. (531 aa) |
| | dinB | nucleotidyltransferase/DNA polymerase protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (435 aa) |
| | SYN_00501 | Hydrolase of the metallo-beta-lactamase superfamily. (272 aa) |
| | SYN_00500 | Hydrolase of the metallo-beta-lactamase superfamily. (345 aa) |
| | SYN_00469 | Rubrerythrin. (182 aa) |
| | SYN_00435 | Chemotaxis protein. (152 aa) |
| | SYN_00433 | Chemotaxis protein. (193 aa) |
| | SYN_00432 | Methyl-accepting chemotaxis protein. (686 aa) |
| | SYN_00431 | Chemotaxis protein. (786 aa) |
| | cheB1 | Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (358 aa) |
| | SYN_00429 | Exodeoxyribonuclease III. (267 aa) |
| | SYN_00427 | ATP-dependent DNA helicase. (700 aa) |
| | SYN_00402 | Deoxyribodipyrimidine photolyase. (460 aa) |
| | SYN_00385 | Hypothetical exported protein. (307 aa) |
| | SYN_00383 | Dead/deah box helicase. (840 aa) |
| | SYN_00370 | benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB. (426 aa) |
| | SYN_00369 | benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB. (426 aa) |
| | SYN_00368 | benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB. (388 aa) |
| | SYN_00359 | DNA polymerase V subunit; Represses a number of genes involved in the response to DNA damage (SOS response). (195 aa) |
| | SYN_00331 | DNA-3-methyladenine glycosylase. (198 aa) |
| | SYN_00287 | Endonuclease III N. (206 aa) |
| | SYN_00286 | DNA polymerase IV; Family X. (584 aa) |
| | SYN_00230 | Response regulator receiver domain and a sigma factor phosphatase domain. (402 aa) |
| | SYN_00227 | Hypothetical cytosolic protein. (104 aa) |
| | SYN_00226 | Signal transduction histidine kinase. (683 aa) |
| | SYN_00204 | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (311 aa) |
| | SYN_00174 | Signal transduction histidine kinase with receiver domain. (615 aa) |
| | SYN_00173 | Response regulator receiver domain. (136 aa) |
| | SYN_00171 | Predicted signal transduction protein. (283 aa) |
| | SYN_00127 | Response regulator receiver domain. (190 aa) |
| | SYN_03680 | Thioredoxin peroxidase. (64 aa) |
| | SYN_03642 | Thioredoxin peroxidase. (115 aa) |
| | SYN_03369 | Hypothetical cytosolic protein. (170 aa) |
| | recR | Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (203 aa) |
| | SYN_03202 | Superoxide dismutase (Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (203 aa) |
| | SYN_03096 | Thioredoxin peroxidase. (103 aa) |
| | SYN_03083 | Thiol-specific antioxidant protein. (85 aa) |
| | hcp-2 | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (542 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (181 aa) |
| | ruvA | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (204 aa) |
| | ruvB | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | ligA | NAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (672 aa) |
| | SYN_02919 | 6-o-methylguanine DNA methyltransferase. (440 aa) |
| | mutL | DNA mismatch repair protein mutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (616 aa) |
| | SYN_02871 | Gamma-carboxymuconolactone decarboxylase. (166 aa) |
| | SYN_02862 | DNA repair protein recN; May be involved in recombinational repair of damaged DNA. (560 aa) |
| | SYN_02825 | Hypothetical cytosolic protein. (262 aa) |
| | lon-2 | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (812 aa) |
| | SYN_02782 | DNA-binding protein, ComEA family. (204 aa) |
| | dacA | Hypothetical membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (499 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1202 aa) |
| | SYN_02722 | Sensory box/GGDEF family protein. (294 aa) |
| | SYN_02721 | HD domain / HAMP domain protein. (484 aa) |
| | SYN_02714 | Signal transduction histidine kinase involved in nitrogen metabolism regulation. (740 aa) |
| | SYN_02713 | Response regulator containing sigma 54 interaction domain. (457 aa) |
| | hcp | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (542 aa) |
| | SYN_02593 | Transcriptional regulator GerE family. (586 aa) |
| | SYN_02584 | Superfamily II DNA helicase. (619 aa) |
| | SYN_02581 | Signal transduction histidine kinase. (437 aa) |
| | SYN_02576 | Signal transduction histidine kinase. (725 aa) |
| | SYN_02570 | Sensory box ggdef family protein. (354 aa) |
| | recC | Exodeoxyribonuclease V gamma chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repa [...] (1113 aa) |
| | SYN_02543 | PAS sensory box/GGDEF family protein. (300 aa) |
| | SYN_02533 | Metallo-beta-lactamase superfamily. (831 aa) |
| | SYN_02531 | Signal transduction histidine kinase. (576 aa) |
| | SYN_02530 | Two-component response regulator. (456 aa) |
| | SYN_02529 | Single-stranded DNA-specific exonuclease. (586 aa) |
| | SYN_02523 | Rubrerythrin. (227 aa) |
| | uvrA | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (940 aa) |
| | SYN_02447 | Pyridine nucleotide-disulphide oxidoreductase family protein. (413 aa) |
| | SYN_02445 | Aromatic ring hydroxylase. (479 aa) |
| | SYN_02396 | Catalase; Belongs to the catalase family. (512 aa) |
| | SYN_02380 | Signal transduction histidine kinase. (546 aa) |
| | SYN_02359 | Serine phosphatase RsbU, regulator of sigma subunit. (652 aa) |
| | SYN_02339 | Transcriptional regulator GerE family. (642 aa) |
| | SYN_02271 | Hypothetical cytosolic protein. (323 aa) |
| | SYN_02258 | cheY-like receiver domain protein. (167 aa) |
| | SYN_02253 | Hypothetical cytosolic protein. (377 aa) |
| | SYN_02215 | Signal transduction histidine kinase. (593 aa) |
| | SYN_02214 | Response regulator with sigma 54 interaction domain. (452 aa) |
| | SYN_02213 | Signal transduction histidine kinase. (718 aa) |
| | SYN_02092 | Fog:ggdef domain membrane protein. (462 aa) |
| | SYN_02088 | A/g-specific DNA glycosylase. (373 aa) |
| | SYN_02087 | Hypothetical cytosolic protein. (154 aa) |
| | SYN_02040 | Hypothetical cytosolic protein. (253 aa) |
| | recA | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (343 aa) |
| | dinB-2 | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (362 aa) |
| | SYN_01990 | ATPase, AAA family. (478 aa) |
| | SYN_01964 | Hypothetical cytosolic protein; Belongs to the UPF0250 family. (119 aa) |
| | SYN_01954 | Signal transduction histidine kinase. (519 aa) |
| | nfi | Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. (273 aa) |
| | SYN_01926 | Tellurium resistance protein. (338 aa) |
| | SYN_01919 | Sigma-54-dependent transcriptional activator. (522 aa) |
| | SYN_01912 | Nuclease. (817 aa) |
| | SYN_01887 | Metal dependent phosphohydrolases. (463 aa) |
| | SYN_01832 | Hypothetical cytosolic protein. (387 aa) |
| | SYN_01831 | Predicted hydrolase; Metallo-beta-lactamase superfamily. (291 aa) |
| | SYN_01809 | Sigma-54-dependent transcriptional regulator. (443 aa) |
| | SYN_01808 | Signal transduction histidine kinase. (503 aa) |
| | SYN_01799 | Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. (282 aa) |
| | SYN_01702 | Response regulator with sigma 54 interaction domain. (502 aa) |
| | SYN_01701 | Signal transduction histidine kinase. (506 aa) |
| | SYN_01636 | Signal transduction histidine kinase. (535 aa) |
| | SYN_01635 | Sigma-54 dependent transcription regulator. (450 aa) |
| | recO | DNA repair protein; Involved in DNA repair and RecF pathway recombination. (277 aa) |
| | SYN_01481 | Adenylate cyclase. (749 aa) |
| | SYN_01466 | Sigma-54 dependent transcriptional regulator. (473 aa) |
| | SYN_01465 | Signal transduction histidine kinase. (415 aa) |
| | SYN_01441 | Pyridine nucleotide oxidoreductase. (479 aa) |
| | SYN_01439 | Thioredoxin reductase. (324 aa) |
| | SYN_01438 | Signal transduction histidine kinase. (561 aa) |
| | mutS | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (880 aa) |
| | SYN_01380 | Hypothetical cytosolic protein. (1210 aa) |
| | SYN_01374 | Sensory transduction protein kinase. (528 aa) |
| | SYN_01373 | Hydrogenase transcriptional regulatory protein. (385 aa) |
| | SYN_01364 | Signal transduction histidine kinase. (752 aa) |
