STRINGSTRING
SYN_02076 SYN_02076 SYN_02108 SYN_02108 SYN_02214 SYN_02214 SYN_02416 SYN_02416 SYN_02530 SYN_02530 SYN_02585 SYN_02585 SYN_02713 SYN_02713 SYN_02899 SYN_02899 SYN_02924 SYN_02924 SYN_02956 SYN_02956 SYN_03180 SYN_03180 SYN_00590 SYN_00590 SYN_00850 SYN_00850 SYN_00973 SYN_00973 SYN_01043 SYN_01043 SYN_01090 SYN_01090 SYN_01093 SYN_01093 SYN_01181 SYN_01181 SYN_01191 SYN_01191 SYN_01317 SYN_01317 SYN_01466 SYN_01466 SYN_01633 SYN_01633 SYN_01635 SYN_01635 SYN_01702 SYN_01702 SYN_01809 SYN_01809 SYN_01921 SYN_01921
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SYN_02076Transcriptional regulator, tetR family. (191 aa)
SYN_02108Transcriptional regulator TetR family. (215 aa)
SYN_02214Response regulator with sigma 54 interaction domain. (452 aa)
SYN_02416Transcriptional regulator TetR family. (223 aa)
SYN_02530Two-component response regulator. (456 aa)
SYN_02585Transcrption factor sigma 54 type. (555 aa)
SYN_02713Response regulator containing sigma 54 interaction domain. (457 aa)
SYN_02899Transcriptional regulator with sigma 54 interaction domain. (592 aa)
SYN_02924Bacterial regulatory protein, Fis family. (166 aa)
SYN_02956Transcriptional regulator containing sigma 54 interaction domain. (697 aa)
SYN_03180Transposase and inactivated derivatives. (174 aa)
SYN_00590Two-component system response regulator. (485 aa)
SYN_00850Transcriptional regulator, TetR family. (236 aa)
SYN_00973Sigma-54 dependent transcriptional regulator. (472 aa)
SYN_01043Transposase. (145 aa)
SYN_01090Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains. (535 aa)
SYN_01093Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (456 aa)
SYN_01181Transcriptional regulator with sigma 54 interaction domain. (455 aa)
SYN_01191Transcriptional regulator with sigma 54 interaction domain. (455 aa)
SYN_01317Transposase and inactivated derivatives. (174 aa)
SYN_01466Sigma-54 dependent transcriptional regulator. (473 aa)
SYN_01633Nif-specific regulatory protein with sigma 54 interaction domain. (513 aa)
SYN_01635Sigma-54 dependent transcription regulator. (450 aa)
SYN_01702Response regulator with sigma 54 interaction domain. (502 aa)
SYN_01809Sigma-54-dependent transcriptional regulator. (443 aa)
SYN_01921Sigma-54-dependent transcriptional activator. (188 aa)
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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