STRINGSTRING
SYN_00890 SYN_00890 SYN_02781 SYN_02781 SYN_02132 SYN_02132 SYN_02007 SYN_02007 SYN_01712 SYN_01712 SYN_01710 SYN_01710 SYN_01299 SYN_01299 SYN_01196 SYN_01196 SYN_00904 SYN_00904 SYN_00800 SYN_00800 SYN_00477 SYN_00477 SYN_00123 SYN_00123
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SYN_00890Homoserine dehydrogenase. (437 aa)
SYN_02781Aspartokinase; Belongs to the aspartokinase family. (406 aa)
SYN_02132Hypothetical transcriptional regulatory protein. (88 aa)
SYN_02007Act domain-containing protein. (179 aa)
SYN_01712Acetolactate synthase small subunit. (166 aa)
SYN_01710Acetolactate synthase small subunit. (157 aa)
SYN_01299Prephenate dehydratase. (354 aa)
SYN_01196Acetolactate synthase small subunit. (143 aa)
SYN_00904GTP pyrophosphokinase / guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (723 aa)
SYN_00800Ferridoxin. (137 aa)
SYN_00477Nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (137 aa)
SYN_00123D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (527 aa)
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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