STRINGSTRING
SYN_00115 SYN_00115 SYN_00480 SYN_00480 SYN_00481 SYN_00481 SYN_01310 SYN_01310 SYN_01431 SYN_01431 SYN_01434 SYN_01434 SYN_01653 SYN_01653 bamA bamA SYN_01655 SYN_01655 SYN_01681 SYN_01681 SYN_02586 SYN_02586 SYN_02587 SYN_02587 SYN_02642 SYN_02642 SYN_02871 SYN_02871
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SYN_00115Na+-transporting decarboxylase, beta subunit. (400 aa)
SYN_00480acyl-CoA dehydrogenase, short-chain specific. (383 aa)
SYN_00481glutaconyl-CoA decarboxylase A subunit. (590 aa)
SYN_013103-hydroxyacyl-CoA dehydrogenase. (283 aa)
SYN_01431glutaconyl-CoA decarboxylase beta subunit. (448 aa)
SYN_01434Na+-translocating decarboxylase, beta subunit. (406 aa)
SYN_01653Putative enoyl-CoA hydratase. (256 aa)
bamAenoyl-CoA hydratase/isomerase family protein; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. (382 aa)
SYN_016556-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase. (370 aa)
SYN_01681acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (388 aa)
SYN_02586acyl-CoA dehydrogenase, medium-chain specific; Mediates the conversion of cyclohexane-1-carbonyl-CoA into cyclohex-1-ene-1-carbonyl-CoA in biosynthesis of cyclohexane-1- carboxylate, a by-product produced during fermentation of benzoate and crotonate to acetate. (384 aa)
SYN_02587acyl-CoA dehydrogenase, short-chain specific; Mediates the conversion of cyclohex-1-ene-1-carbonyl-CoA into (E)-2-cyclohex-1,5-diene-1-carbonyl-CoA in biosynthesis of cyclohexane- 1-carboxylate, a by-product produced during fermentation of benzoate and crotonate to acetate. Also able to further convert (E)-2-cyclohex- 1,5-diene-1-carbonyl-CoA to benzoyl-CoA. (414 aa)
SYN_02642acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (430 aa)
SYN_02871Gamma-carboxymuconolactone decarboxylase. (166 aa)
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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