STRINGSTRING
rluC rluC gph gph gafA gafA OFA33199.1 OFA33199.1 proQ proQ prc prc OFA33202.1 OFA33202.1 nhaC nhaC nlpB nlpB hda hda OFA33366.1 OFA33366.1 ndpA ndpA OFA33462.1 OFA33462.1 zipA zipA cysZ cysZ nlpI nlpI lptE lptE OFA33570.1 OFA33570.1 mutH mutH metJ metJ OFA32672.1 OFA32672.1 OFA32959.1 OFA32959.1 dam dam BAE46_04410 BAE46_04410 ygiM ygiM OFA32563.1 OFA32563.1 OFA32306.1 OFA32306.1 ytfM ytfM OFA32308.1 OFA32308.1 dsbA dsbA OFA32392.1 OFA32392.1 zapD zapD ampE ampE OFA32452.1 OFA32452.1 pepP pepP syd syd yaeT yaeT dsbB dsbB fadR fadR omlA omlA lolB lolB OFA31735.1 OFA31735.1 OFA31034.1 OFA31034.1 OFA31035.1 OFA31035.1 dsbA-2 dsbA-2 sixA sixA rlmN rlmN pilF pilF rodZ rodZ OFA30597.1 OFA30597.1 yfgL yfgL bamD bamD rraB rraB slmA slmA OFA30388.1 OFA30388.1 lptD lptD dsbC dsbC OFA30126.1 OFA30126.1 OFA30076.1 OFA30076.1 cvpA cvpA dedD dedD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rluC23S rRNA pseudouridine(955/2504/2580) synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (315 aa)
gphHAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
gafAGAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
OFA33199.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)
proQHypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. (238 aa)
prcC-terminal processing peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (712 aa)
OFA33202.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
nhaCNa+/H+ antiporter NhaC; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
nlpBOuter membrane assembly protein BamC; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (367 aa)
hdaDnaA regulatory inactivator Hda; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the DnaA family. HdA subfamily. (235 aa)
OFA33366.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (391 aa)
ndpANucleoid-associated protein YejK; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
OFA33462.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
zipACell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. (496 aa)
cysZSulfate transporter CysZ; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family. (238 aa)
nlpIHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
lptEHypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. (206 aa)
OFA33570.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
mutHDNA mismatch repair endonuclease MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. (222 aa)
metJTranscriptional regulator; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. (107 aa)
OFA32672.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
OFA32959.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
damDNA adenine methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
BAE46_04410DUF4442 domain-containing protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
ygiMHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (216 aa)
OFA32563.1CYTH domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
OFA32306.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (77 aa)
ytfMHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (604 aa)
OFA32308.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1344 aa)
dsbADisulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
OFA32392.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
zapDCell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. (248 aa)
ampEHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
OFA32452.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0149 family. (193 aa)
pepPXaa-Pro aminopeptidase; Exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
sydSecY-interacting protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family. (197 aa)
yaeTOuter membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (830 aa)
dsbBDisulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. (174 aa)
fadRFatty acid metabolism regulator; Multifunctional regulator of fatty acid metabolism. (236 aa)
omlACell envelope protein SmpA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (118 aa)
lolBOuter membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. (233 aa)
OFA31735.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
OFA31034.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
OFA31035.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
dsbA-2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
sixAPhosphohistidine phosphatase SixA; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (176 aa)
rlmNDual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (388 aa)
pilFType IV pilus biogenesis/stability protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
rodZHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (369 aa)
OFA30597.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
yfgLOuter membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (411 aa)
bamDHypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (256 aa)
rraBRibonuclease E inhibitor B; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. (134 aa)
slmANucleoid occlusion factor SlmA; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions. (196 aa)
OFA30388.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
lptDLPS biosynthesis protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (728 aa)
dsbCThiol:disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (242 aa)
OFA30126.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (653 aa)
OFA30076.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (223 aa)
cvpABacteriocin production protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
dedDHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
Your Current Organism:
Glaciecola punicea
NCBI taxonomy Id: 56804
Other names: ACAM 611, ATCC 700756, CIP 105817, G. punicea, marine psychrophile IC059, marine psychrophile IC067, marine psychrophile IC085, strain IC067
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