(28 nodes) CCR4-NOT core complex network (Macleaya cordata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BVC80_901g53	F-box domain. (440 aa)
	BVC80_901g56	Uncharacterized protein. (377 aa)
	BVC80_1289g21	Ribonuclease CAF1. (277 aa)
	BVC80_7705g2	Ribonuclease CAF1. (250 aa)
	BVC80_479g47	Ribonuclease CAF1. (279 aa)
	BVC80_311g19	Ribonuclease CAF1. (274 aa)
	BVC80_5431g1	F-box domain. (247 aa)
	BVC80_8659g12	F-box domain. (506 aa)
	BVC80_901g50	F-box domain. (453 aa)
	BVC80_901g48	F-box domain. (415 aa)
	BVC80_901g54	Uncharacterized protein. (400 aa)
	BVC80_901g60	Uncharacterized protein. (370 aa)
	BVC80_9101g308	Rcd1. (340 aa)
	BVC80_8911g18	Ribonuclease CAF1. (273 aa)
	BVC80_1651g71	NOT2/NOT3/NOT5. (662 aa)
	BVC80_205g51	Rcd1. (314 aa)
	BVC80_1493g10	Ribonuclease CAF1. (271 aa)
	BVC80_1001g9	CCR4-Not complex component. (2459 aa)
	BVC80_637g10	F-box domain. (464 aa)
	BVC80_1787g3	Uncharacterized protein. (140 aa)
	BVC80_1787g244	NOT2/NOT3/NOT5. (646 aa)
	BVC80_7085g1	Ribonuclease CAF1. (271 aa)
	BVC80_243g28	CCR4-Not complex component. (887 aa)
	BVC80_8333g4	F-box domain. (413 aa)
	BVC80_8085g4	Ribonuclease CAF1. (285 aa)
	BVC80_211g8	F-box domain. (423 aa)
	BVC80_7917g2	Ribonuclease CAF1. (251 aa)
	BVC80_1525g9	F-box domain. (500 aa)

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1001g9	BVC80_1289g21	A0A200QIW2	A0A200Q9C0	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_1493g10	A0A200QIW2	A0A200QIW0	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_1525g9	A0A200QIW2	A0A200PMV0	CCR4-Not complex component.	F-box domain.	0.837
BVC80_1001g9	BVC80_1651g71	A0A200QIW2	A0A200PZD6	CCR4-Not complex component.	NOT2/NOT3/NOT5.	0.988
BVC80_1001g9	BVC80_1787g244	A0A200QIW2	A0A200QUJ2	CCR4-Not complex component.	NOT2/NOT3/NOT5.	0.988
BVC80_1001g9	BVC80_1787g3	A0A200QIW2	A0A200QTZ3	CCR4-Not complex component.	Uncharacterized protein.	0.988
BVC80_1001g9	BVC80_205g51	A0A200QIW2	A0A200PZ32	CCR4-Not complex component.	Rcd1.	0.987
BVC80_1001g9	BVC80_211g8	A0A200QIW2	A0A200PUW6	CCR4-Not complex component.	F-box domain.	0.837
BVC80_1001g9	BVC80_243g28	A0A200QIW2	A0A200R123	CCR4-Not complex component.	CCR4-Not complex component.	0.998
BVC80_1001g9	BVC80_311g19	A0A200QIW2	A0A200Q632	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_479g47	A0A200QIW2	A0A200Q7Q3	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_5431g1	A0A200QIW2	A0A200Q397	CCR4-Not complex component.	F-box domain.	0.837
BVC80_1001g9	BVC80_637g10	A0A200QIW2	A0A200QMW7	CCR4-Not complex component.	F-box domain.	0.837
BVC80_1001g9	BVC80_7085g1	A0A200QIW2	A0A200R0W9	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_7705g2	A0A200QIW2	A0A200Q8X7	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_7917g2	A0A200QIW2	A0A200PN12	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_8085g4	A0A200QIW2	A0A200PY88	CCR4-Not complex component.	Ribonuclease CAF1.	0.891
BVC80_1001g9	BVC80_8333g4	A0A200QIW2	A0A200R8I1	CCR4-Not complex component.	F-box domain.	0.837
BVC80_1001g9	BVC80_8659g12	A0A200QIW2	A0A200Q2Y8	CCR4-Not complex component.	F-box domain.	0.837
BVC80_1001g9	BVC80_8911g18	A0A200QIW2	A0A200QIH7	CCR4-Not complex component.	Ribonuclease CAF1.	0.891