(9 nodes) Ribulose bisphosphate carboxylase complex assembly network (Macleaya cordata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BVC80_497g11	Transcriptional coactivator/pterin dehydratase. (230 aa)
	BVC80_339g50	Helicase. (646 aa)
	BVC80_9099g262	Uncharacterized protein. (399 aa)
	BVC80_1165g14	Transcriptional coactivator/pterin dehydratase. (122 aa)
	BVC80_957g5	Uncharacterized protein. (189 aa)
	BVC80_9081g9	Galactose-1-phosphate uridyl transferase. (438 aa)
	BVC80_9055g47	Chaperonin-like RbcX. (227 aa)
	BVC80_9089g3	Uncharacterized protein. (133 aa)
	BVC80_9101g294	Chaperonin-like RbcX. (157 aa)

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_9055g47	BVC80_9101g294	A0A200R9J6	A0A200QGZ5	Chaperonin-like RbcX.	Chaperonin-like RbcX.	0.487
BVC80_9081g9	BVC80_9089g3	A0A200PRK8	A0A200PQD9	Galactose-1-phosphate uridyl transferase.	Uncharacterized protein.	0.510
BVC80_9089g3	BVC80_9081g9	A0A200PQD9	A0A200PRK8	Uncharacterized protein.	Galactose-1-phosphate uridyl transferase.	0.510
BVC80_9089g3	BVC80_9099g262	A0A200PQD9	A0A200PW58	Uncharacterized protein.	Uncharacterized protein.	0.569
BVC80_9099g262	BVC80_9089g3	A0A200PW58	A0A200PQD9	Uncharacterized protein.	Uncharacterized protein.	0.569
BVC80_9101g294	BVC80_9055g47	A0A200QGZ5	A0A200R9J6	Chaperonin-like RbcX.	Chaperonin-like RbcX.	0.487