(37 nodes) Ribosomal protein S5 domain 2-type fold, subgroup network (Macleaya cordata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BVC80_8835g2	DNA mismatch repair protein. (750 aa)
	BVC80_1313g35	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	BVC80_67g8	GHMP kinase N-terminal domain. (1007 aa)
	BVC80_379g121	Galactokinase. (499 aa)
	BVC80_285g7	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (276 aa)
	BVC80_9019g16	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (887 aa)
	BVC80_9013g13	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	BVC80_1791g21	DNA repair protein RadA. (85 aa)
	BVC80_745g4	Elongation factor. (754 aa)
	BVC80_8183g7	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (428 aa)
	BVC80_1547g12	Translation elongation factor EFG. (989 aa)
	BVC80_209g308	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (416 aa)
	BVC80_8135g3	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (758 aa)
	BVC80_165g12	DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (721 aa)
	TOP6B	DNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family. (674 aa)
	BVC80_1707g105	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (422 aa)
	BVC80_9037g22	Mevalonate kinase. (432 aa)
	BVC80_8893g45	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (212 aa)
	BVC80_8385g6	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (276 aa)
	BVC80_6853g3	Translation elongation factor EFG. (823 aa)
	BVC80_8621g4	Translation elongation factor EFG. (1025 aa)
	BVC80_8797g16	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (715 aa)
	BVC80_9095g33	GHMP kinase N-terminal domain. (508 aa)
	BVC80_9091g169	DNA mismatch repair protein. (929 aa)
	BVC80_9099g100	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (535 aa)
	BVC80_9083g73	Translation elongation factor EFG. (843 aa)
	BVC80_9085g55	Homoserine kinase. (432 aa)
	BVC80_9085g44	DNA mismatch repair protein. (1289 aa)
	BVC80_1183g78	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (312 aa)
	BVC80_1543g189	Galactokinase. (497 aa)
	BVC80_8125g6	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (997 aa)
	BVC80_521g74	GHMP kinase N-terminal domain. (989 aa)
	BVC80_521g61	GHMP kinase N-terminal domain. (437 aa)
	BVC80_9055g27	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (276 aa)
	BVC80_9055g6	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1515 aa)
	BVC80_881g10	4-diphosphocytidyl-2C-methyl-D-erythritol kinase. (401 aa)
	BVC80_8487g9	Translation elongation factor EFG. (843 aa)

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1183g78	BVC80_1313g35	A0A200PQ96	A0A200QYV9	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.975
BVC80_1183g78	BVC80_1547g12	A0A200PQ96	A0A200R1K6	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Translation elongation factor EFG.	0.788
BVC80_1183g78	BVC80_209g308	A0A200PQ96	A0A200QDN2	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.974
BVC80_1183g78	BVC80_6853g3	A0A200PQ96	A0A200Q0K8	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Translation elongation factor EFG.	0.851
BVC80_1183g78	BVC80_745g4	A0A200PQ96	A0A200QN78	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Elongation factor.	0.851
BVC80_1183g78	BVC80_8135g3	A0A200PQ96	A0A200QAX6	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.794
BVC80_1183g78	BVC80_8487g9	A0A200PQ96	A0A200R162	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Translation elongation factor EFG.	0.851
BVC80_1183g78	BVC80_8621g4	A0A200PQ96	A0A200PYL4	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Translation elongation factor EFG.	0.788
BVC80_1183g78	BVC80_8797g16	A0A200PQ96	A0A200PXP7	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.835
BVC80_1183g78	BVC80_8893g45	A0A200PQ96	A0A200Q420	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.974
BVC80_1183g78	BVC80_9013g13	A0A200PQ96	A0A200QQ10	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.975
BVC80_1183g78	BVC80_9083g73	A0A200PQ96	A0A200PRE7	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Translation elongation factor EFG.	0.851
BVC80_1183g78	BVC80_9099g100	A0A200PQ96	A0A200PVP8	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.911
BVC80_1313g35	BVC80_1183g78	A0A200QYV9	A0A200PQ96	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.975
BVC80_1313g35	BVC80_1547g12	A0A200QYV9	A0A200R1K6	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Translation elongation factor EFG.	0.809
BVC80_1313g35	BVC80_209g308	A0A200QYV9	A0A200QDN2	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.945
BVC80_1313g35	BVC80_285g7	A0A200QYV9	A0A200QS43	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.975
BVC80_1313g35	BVC80_6853g3	A0A200QYV9	A0A200Q0K8	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Translation elongation factor EFG.	0.901
BVC80_1313g35	BVC80_745g4	A0A200QYV9	A0A200QN78	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Elongation factor.	0.901
BVC80_1313g35	BVC80_8135g3	A0A200QYV9	A0A200QAX6	Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.785