(42 nodes) Mixed, incl. Phosphopantetheine, and D-Alanine metabolism network (Dickeya sp. NCPPB569)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000406125_00398	Unannotated protein. (358 aa)
	GCA_000406125_00399	Unannotated protein; Belongs to the cytochrome P450 family. (436 aa)
	GCA_000406125_00408	Unannotated protein. (503 aa)
	GCA_000406125_00409	Unannotated protein. (517 aa)
	GCA_000406125_00474	Unannotated protein; Belongs to the P-Pant transferase superfamily. (239 aa)
	GCA_000406125_00499	Unannotated protein. (1036 aa)
	GCA_000406125_00501	Unannotated protein. (346 aa)
	GCA_000406125_00502	Unannotated protein. (429 aa)
	GCA_000406125_00503	Unannotated protein. (1657 aa)
	GCA_000406125_00504	Unannotated protein. (2099 aa)
	GCA_000406125_00509	Unannotated protein. (537 aa)
	GCA_000406125_00510	Unannotated protein. (230 aa)
	ddlA	Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (356 aa)
	GCA_000406125_00823	Unannotated protein. (380 aa)
	GCA_000406125_00825	Unannotated protein; Belongs to the membrane-bound acyltransferase family. (372 aa)
	GCA_000406125_00826	Unannotated protein. (478 aa)
	GCA_000406125_00827	Unannotated protein. (73 aa)
	GCA_000406125_00886	Unannotated protein. (2125 aa)
	GCA_000406125_00887	Unannotated protein. (1372 aa)
	GCA_000406125_00888	Unannotated protein. (1316 aa)
	GCA_000406125_01677	Unannotated protein. (240 aa)
	GCA_000406125_02283	Unannotated protein. (367 aa)
	GCA_000406125_02643	Unannotated protein. (2104 aa)
	GCA_000406125_02646	Unannotated protein. (415 aa)
	GCA_000406125_02783	Unannotated protein. (1355 aa)
	GCA_000406125_02784	Unannotated protein. (1517 aa)
	GCA_000406125_02785	Unannotated protein. (72 aa)
	fes	Unannotated protein. (430 aa)
	entE	Unannotated protein. (542 aa)
	GCA_000406125_02791	Unannotated protein. (291 aa)
	dhbA	Unannotated protein. (252 aa)
	GCA_000406125_02813	Unannotated protein. (290 aa)
	GCA_000406125_02822	Unannotated protein; Belongs to the cytochrome P450 family. (426 aa)
	GCA_000406125_02823	Unannotated protein. (1920 aa)
	GCA_000406125_02824	Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. (1163 aa)
	GCA_000406125_02826	Unannotated protein. (2301 aa)
	fabD-2	Unannotated protein. (628 aa)
	GCA_000406125_02830	Unannotated protein. (329 aa)
	GCA_000406125_02831	Unannotated protein. (5344 aa)
	alr	Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (358 aa)
	GCA_000406125_03828	Unannotated protein. (468 aa)
	GCA_000406125_03829	Unannotated protein. (1030 aa)

Your Current Organism:

Dickeya sp. NCPPB569

NCBI taxonomy Id: 568768
Other names: D. sp. NCPPB 569, Dickeya sp. NCPPB 569

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_000406125_00398	GCA_000406125_00399	GCA_000406125_00398	GCA_000406125_00399	Unannotated protein.	Unannotated protein; Belongs to the cytochrome P450 family.	0.994
GCA_000406125_00398	GCA_000406125_00408	GCA_000406125_00398	GCA_000406125_00408	Unannotated protein.	Unannotated protein.	0.954
GCA_000406125_00398	GCA_000406125_00409	GCA_000406125_00398	GCA_000406125_00409	Unannotated protein.	Unannotated protein.	0.940
GCA_000406125_00398	GCA_000406125_00474	GCA_000406125_00398	GCA_000406125_00474	Unannotated protein.	Unannotated protein; Belongs to the P-Pant transferase superfamily.	0.917
GCA_000406125_00398	GCA_000406125_00499	GCA_000406125_00398	GCA_000406125_00499	Unannotated protein.	Unannotated protein.	0.958
GCA_000406125_00398	GCA_000406125_00501	GCA_000406125_00398	GCA_000406125_00501	Unannotated protein.	Unannotated protein.	0.999
GCA_000406125_00398	GCA_000406125_00502	GCA_000406125_00398	GCA_000406125_00502	Unannotated protein.	Unannotated protein.	0.988
GCA_000406125_00398	GCA_000406125_00503	GCA_000406125_00398	GCA_000406125_00503	Unannotated protein.	Unannotated protein.	0.999
GCA_000406125_00398	GCA_000406125_00504	GCA_000406125_00398	GCA_000406125_00504	Unannotated protein.	Unannotated protein.	0.999
GCA_000406125_00398	GCA_000406125_00509	GCA_000406125_00398	GCA_000406125_00509	Unannotated protein.	Unannotated protein.	0.999
GCA_000406125_00398	GCA_000406125_00510	GCA_000406125_00398	GCA_000406125_00510	Unannotated protein.	Unannotated protein.	0.837
GCA_000406125_00398	GCA_000406125_00823	GCA_000406125_00398	GCA_000406125_00823	Unannotated protein.	Unannotated protein.	0.946
GCA_000406125_00398	GCA_000406125_00825	GCA_000406125_00398	GCA_000406125_00825	Unannotated protein.	Unannotated protein; Belongs to the membrane-bound acyltransferase family.	0.952
GCA_000406125_00398	GCA_000406125_00826	GCA_000406125_00398	GCA_000406125_00826	Unannotated protein.	Unannotated protein.	0.985
GCA_000406125_00398	GCA_000406125_00827	GCA_000406125_00398	GCA_000406125_00827	Unannotated protein.	Unannotated protein.	0.685
GCA_000406125_00398	GCA_000406125_00886	GCA_000406125_00398	GCA_000406125_00886	Unannotated protein.	Unannotated protein.	0.982
GCA_000406125_00398	GCA_000406125_00887	GCA_000406125_00398	GCA_000406125_00887	Unannotated protein.	Unannotated protein.	0.995
GCA_000406125_00398	GCA_000406125_00888	GCA_000406125_00398	GCA_000406125_00888	Unannotated protein.	Unannotated protein.	0.996
GCA_000406125_00398	GCA_000406125_01677	GCA_000406125_00398	GCA_000406125_01677	Unannotated protein.	Unannotated protein.	0.870
GCA_000406125_00398	GCA_000406125_02283	GCA_000406125_00398	GCA_000406125_02283	Unannotated protein.	Unannotated protein.	0.534