STRINGSTRING
rsmH rsmH rsmF rsmF rsmB rsmB rsmI rsmI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rsmHUnannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (313 aa)
rsmFUnannotated protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. (482 aa)
rsmBUnannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (431 aa)
rsmIUnannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (289 aa)
Your Current Organism:
Dickeya sp. NCPPB569
NCBI taxonomy Id: 568768
Other names: D. sp. NCPPB 569, Dickeya sp. NCPPB 569
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