STRINGSTRING
dsdA dsdA GCA_000406125_00120 GCA_000406125_00120 metB metB metC metC GCA_000406125_00414 GCA_000406125_00414 GCA_000406125_00440 GCA_000406125_00440 GCA_000406125_00503 GCA_000406125_00503 GCA_000406125_00504 GCA_000406125_00504 GCA_000406125_00509 GCA_000406125_00509 alsS alsS ygfZ ygfZ nifJ nifJ GCA_000406125_00886 GCA_000406125_00886 GCA_000406125_00888 GCA_000406125_00888 csdA csdA dxs dxs menD menD sucA sucA GCA_000406125_01446 GCA_000406125_01446 GCA_000406125_01449 GCA_000406125_01449 GCA_000406125_01467 GCA_000406125_01467 GCA_000406125_01470 GCA_000406125_01470 bioA bioA bioF bioF GCA_000406125_01592 GCA_000406125_01592 serC serC hisC hisC GCA_000406125_02089 GCA_000406125_02089 GCA_000406125_02090 GCA_000406125_02090 sufS sufS GCA_000406125_02283 GCA_000406125_02283 GCA_000406125_02299 GCA_000406125_02299 pabC pabC GCA_000406125_02643 GCA_000406125_02643 GCA_000406125_02651 GCA_000406125_02651 GCA_000406125_02678 GCA_000406125_02678 GCA_000406125_02712 GCA_000406125_02712 GCA_000406125_02783 GCA_000406125_02783 GCA_000406125_02784 GCA_000406125_02784 GCA_000406125_02812 GCA_000406125_02812 GCA_000406125_02823 GCA_000406125_02823 GCA_000406125_02824 GCA_000406125_02824 GCA_000406125_02829 GCA_000406125_02829 iscS iscS glyA glyA GCA_000406125_02987 GCA_000406125_02987 btuF btuF hemL hemL GCA_000406125_03095 GCA_000406125_03095 GCA_000406125_03204 GCA_000406125_03204 GCA_000406125_03239 GCA_000406125_03239 lysA lysA alr alr GCA_000406125_03281 GCA_000406125_03281 ilvI ilvI GCA_000406125_03370 GCA_000406125_03370 ilvB ilvB thrC thrC queG queG metH metH argD argD malP malP GCA_000406125_03630 GCA_000406125_03630 rffA rffA ilvA ilvA GCA_000406125_03714 GCA_000406125_03714 kbl kbl GCA_000406125_03829 GCA_000406125_03829 GCA_000406125_03865 GCA_000406125_03865 GCA_000406125_03878 GCA_000406125_03878
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dsdAUnannotated protein. (455 aa)
GCA_000406125_00120Unannotated protein. (394 aa)
metBUnannotated protein. (386 aa)
metCUnannotated protein. (397 aa)
GCA_000406125_00414Unannotated protein. (435 aa)
GCA_000406125_00440Unannotated protein. (482 aa)
GCA_000406125_00503Unannotated protein. (1657 aa)
GCA_000406125_00504Unannotated protein. (2099 aa)
GCA_000406125_00509Unannotated protein. (537 aa)
alsSUnannotated protein; Belongs to the TPP enzyme family. (559 aa)
ygfZUnannotated protein; Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication; Belongs to the tRNA-modifying YgfZ family. (326 aa)
nifJUnannotated protein. (1177 aa)
GCA_000406125_00886Unannotated protein. (2125 aa)
GCA_000406125_00888Unannotated protein. (1316 aa)
csdAUnannotated protein. (401 aa)
dxsUnannotated protein; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (620 aa)
menDUnannotated protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. (503 aa)
sucAUnannotated protein. (935 aa)
GCA_000406125_01446Unannotated protein. (492 aa)
GCA_000406125_01449Unannotated protein. (376 aa)
GCA_000406125_01467Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa)
GCA_000406125_01470Unannotated protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (417 aa)
bioAUnannotated protein; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (430 aa)
bioFUnannotated protein; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. (384 aa)
GCA_000406125_01592Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (446 aa)
serCUnannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (361 aa)
hisCUnannotated protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (356 aa)
GCA_000406125_02089Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (448 aa)
GCA_000406125_02090Unannotated protein. (495 aa)
sufSUnannotated protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. (407 aa)
GCA_000406125_02283Unannotated protein. (367 aa)
GCA_000406125_02299Unannotated protein. (396 aa)
pabCUnannotated protein. (235 aa)
GCA_000406125_02643Unannotated protein. (2104 aa)
GCA_000406125_02651Unannotated protein. (391 aa)
GCA_000406125_02678Unannotated protein. (463 aa)
GCA_000406125_02712Unannotated protein. (404 aa)
GCA_000406125_02783Unannotated protein. (1355 aa)
GCA_000406125_02784Unannotated protein. (1517 aa)
GCA_000406125_02812Unannotated protein. (403 aa)
GCA_000406125_02823Unannotated protein. (1920 aa)
GCA_000406125_02824Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family. (1163 aa)
GCA_000406125_02829Unannotated protein. (414 aa)
iscSUnannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (404 aa)
glyAUnannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (417 aa)
GCA_000406125_02987Unannotated protein. (422 aa)
btuFUnannotated protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC. (249 aa)
hemLUnannotated protein. (426 aa)
GCA_000406125_03095Unannotated protein. (385 aa)
GCA_000406125_03204Unannotated protein. (357 aa)
GCA_000406125_03239Unannotated protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. (245 aa)
lysAUnannotated protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (420 aa)
alrUnannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (358 aa)
GCA_000406125_03281Unannotated protein. (397 aa)
ilvIUnannotated protein. (573 aa)
GCA_000406125_03370Unannotated protein. (327 aa)
ilvBUnannotated protein. (554 aa)
thrCUnannotated protein. (429 aa)
queGUnannotated protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (379 aa)
metHUnannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1227 aa)
argDUnannotated protein; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (413 aa)
malPUnannotated protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (805 aa)
GCA_000406125_03630Unannotated protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (815 aa)
rffAUnannotated protein; Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D- galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D- Glc4O) and L-glutamate; Belongs to the DegT/DnrJ/EryC1 family. (376 aa)
ilvAUnannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (514 aa)
GCA_000406125_03714Unannotated protein. (548 aa)
kblUnannotated protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (398 aa)
GCA_000406125_03829Unannotated protein. (1030 aa)
GCA_000406125_03865Unannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (373 aa)
GCA_000406125_03878Unannotated protein. (418 aa)
Your Current Organism:
Dickeya sp. NCPPB569
NCBI taxonomy Id: 568768
Other names: D. sp. NCPPB 569, Dickeya sp. NCPPB 569
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