14 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_07489	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (471 aa)
	PV07_07868	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (748 aa)
	PV07_08269	Uncharacterized protein. (340 aa)
	PV07_03403	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (809 aa)
	PV07_10663	Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (388 aa)
	PV07_09652	Citrate synthase; Belongs to the citrate synthase family. (468 aa)
	PV07_11814	Aspartate aminotransferase. (441 aa)
	PV07_08497	Aspartate aminotransferase. (430 aa)
	PV07_06816	Malate dehydrogenase. (340 aa)
	PV07_04183	Citrate synthase; Belongs to the citrate synthase family. (468 aa)
	PV07_00180	ATP-citrate synthase subunit 1. (676 aa)
	PV07_09420	Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (387 aa)
	PV07_00181	Uncharacterized protein. (484 aa)
	PV07_02077	Malate dehydrogenase. (340 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00180	PV07_00181	A0A0D2CQ05	A0A0D2DC71	ATP-citrate synthase subunit 1.	Uncharacterized protein.	0.997
PV07_00180	PV07_02077	A0A0D2CQ05	A0A0D2DI04	ATP-citrate synthase subunit 1.	Malate dehydrogenase.	0.907
PV07_00180	PV07_03403	A0A0D2CQ05	A0A0D1ZUK3	ATP-citrate synthase subunit 1.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.748
PV07_00180	PV07_04183	A0A0D2CQ05	A0A0D2CN38	ATP-citrate synthase subunit 1.	Citrate synthase; Belongs to the citrate synthase family.	0.973
PV07_00180	PV07_06816	A0A0D2CQ05	A0A0D2C9B1	ATP-citrate synthase subunit 1.	Malate dehydrogenase.	0.907
PV07_00180	PV07_07489	A0A0D2CQ05	A0A0D1ZII8	ATP-citrate synthase subunit 1.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.706
PV07_00180	PV07_07868	A0A0D2CQ05	A0A0D1ZJL2	ATP-citrate synthase subunit 1.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.856
PV07_00180	PV07_08269	A0A0D2CQ05	A0A0D1ZKW3	ATP-citrate synthase subunit 1.	Uncharacterized protein.	0.706
PV07_00180	PV07_08497	A0A0D2CQ05	A0A0D2C478	ATP-citrate synthase subunit 1.	Aspartate aminotransferase.	0.795
PV07_00180	PV07_09420	A0A0D2CQ05	A0A0D2CRU2	ATP-citrate synthase subunit 1.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.469
PV07_00180	PV07_09652	A0A0D2CQ05	A0A0D2ANA4	ATP-citrate synthase subunit 1.	Citrate synthase; Belongs to the citrate synthase family.	0.973
PV07_00180	PV07_11814	A0A0D2CQ05	A0A0D2BX03	ATP-citrate synthase subunit 1.	Aspartate aminotransferase.	0.718
PV07_00181	PV07_00180	A0A0D2DC71	A0A0D2CQ05	Uncharacterized protein.	ATP-citrate synthase subunit 1.	0.997
PV07_00181	PV07_02077	A0A0D2DC71	A0A0D2DI04	Uncharacterized protein.	Malate dehydrogenase.	0.907
PV07_00181	PV07_03403	A0A0D2DC71	A0A0D1ZUK3	Uncharacterized protein.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.748
PV07_00181	PV07_04183	A0A0D2DC71	A0A0D2CN38	Uncharacterized protein.	Citrate synthase; Belongs to the citrate synthase family.	0.973
PV07_00181	PV07_06816	A0A0D2DC71	A0A0D2C9B1	Uncharacterized protein.	Malate dehydrogenase.	0.907
PV07_00181	PV07_07489	A0A0D2DC71	A0A0D1ZII8	Uncharacterized protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.706
PV07_00181	PV07_07868	A0A0D2DC71	A0A0D1ZJL2	Uncharacterized protein.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.856
PV07_00181	PV07_08269	A0A0D2DC71	A0A0D1ZKW3	Uncharacterized protein.	Uncharacterized protein.	0.706