(5 nodes) Small ribosomal subunit rRNA binding, and Ribosomal protein S2 network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_03663	Uncharacterized protein. (271 aa)
	PV07_00298	Ribosomal protein S12, variant. (185 aa)
	PV07_06570	Ribosomal protein S10. (395 aa)
	PV07_08120	Ribosomal protein S2. (415 aa)
	PV07_00020	Ribosomal protein S6. (137 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00020	PV07_00298	A0A0D2DBQ3	A0A0D1ZZ93	Ribosomal protein S6.	Ribosomal protein S12, variant.	0.999
PV07_00020	PV07_03663	A0A0D2DBQ3	A0A0D1ZVD8	Ribosomal protein S6.	Uncharacterized protein.	0.999
PV07_00020	PV07_06570	A0A0D2DBQ3	A0A0D2ANU4	Ribosomal protein S6.	Ribosomal protein S10.	0.999
PV07_00020	PV07_08120	A0A0D2DBQ3	A0A0D2CXY0	Ribosomal protein S6.	Ribosomal protein S2.	0.999
PV07_00298	PV07_00020	A0A0D1ZZ93	A0A0D2DBQ3	Ribosomal protein S12, variant.	Ribosomal protein S6.	0.999
PV07_00298	PV07_03663	A0A0D1ZZ93	A0A0D1ZVD8	Ribosomal protein S12, variant.	Uncharacterized protein.	0.999
PV07_00298	PV07_06570	A0A0D1ZZ93	A0A0D2ANU4	Ribosomal protein S12, variant.	Ribosomal protein S10.	0.999
PV07_00298	PV07_08120	A0A0D1ZZ93	A0A0D2CXY0	Ribosomal protein S12, variant.	Ribosomal protein S2.	0.999
PV07_03663	PV07_00020	A0A0D1ZVD8	A0A0D2DBQ3	Uncharacterized protein.	Ribosomal protein S6.	0.999
PV07_03663	PV07_00298	A0A0D1ZVD8	A0A0D1ZZ93	Uncharacterized protein.	Ribosomal protein S12, variant.	0.999
PV07_03663	PV07_06570	A0A0D1ZVD8	A0A0D2ANU4	Uncharacterized protein.	Ribosomal protein S10.	0.999
PV07_03663	PV07_08120	A0A0D1ZVD8	A0A0D2CXY0	Uncharacterized protein.	Ribosomal protein S2.	0.999
PV07_06570	PV07_00020	A0A0D2ANU4	A0A0D2DBQ3	Ribosomal protein S10.	Ribosomal protein S6.	0.999
PV07_06570	PV07_00298	A0A0D2ANU4	A0A0D1ZZ93	Ribosomal protein S10.	Ribosomal protein S12, variant.	0.999
PV07_06570	PV07_03663	A0A0D2ANU4	A0A0D1ZVD8	Ribosomal protein S10.	Uncharacterized protein.	0.999
PV07_06570	PV07_08120	A0A0D2ANU4	A0A0D2CXY0	Ribosomal protein S10.	Ribosomal protein S2.	0.999
PV07_08120	PV07_00020	A0A0D2CXY0	A0A0D2DBQ3	Ribosomal protein S2.	Ribosomal protein S6.	0.999
PV07_08120	PV07_00298	A0A0D2CXY0	A0A0D1ZZ93	Ribosomal protein S2.	Ribosomal protein S12, variant.	0.999
PV07_08120	PV07_03663	A0A0D2CXY0	A0A0D1ZVD8	Ribosomal protein S2.	Uncharacterized protein.	0.999
PV07_08120	PV07_06570	A0A0D2CXY0	A0A0D2ANU4	Ribosomal protein S2.	Ribosomal protein S10.	0.999