(17 nodes) Phox homology, and Retromer complex network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_07095	Rab-GAP TBC domain-containing protein. (1145 aa)
	PV07_00762	PX domain-containing protein. (707 aa)
	PV07_10919	PX domain-containing protein. (951 aa)
	PV07_10066	Sorting nexin-3. (143 aa)
	PV07_02080	PX domain-containing protein. (626 aa)
	PV07_11101	PX domain-containing protein. (580 aa)
	PV07_12403	Uncharacterized protein. (744 aa)
	PV07_11272	PX domain-containing protein. (200 aa)
	PV07_10764	Uncharacterized protein. (327 aa)
	PV07_09201	GH16 domain-containing protein. (658 aa)
	PV07_07393	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family. (615 aa)
	PV07_04839	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (869 aa)
	PV07_11214	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. (1512 aa)
	PV07_11433	PX domain-containing protein. (487 aa)
	PV07_03585	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (200 aa)
	PV07_02987	Uncharacterized protein. (322 aa)
	PV07_01616	Glycosidase; Belongs to the glycosyl hydrolase 16 family. (450 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00762	PV07_02080	A0A0D2A0L0	A0A0D2BCZ1	PX domain-containing protein.	PX domain-containing protein.	0.445
PV07_00762	PV07_02987	A0A0D2A0L0	A0A0D2CMP4	PX domain-containing protein.	Uncharacterized protein.	0.723
PV07_00762	PV07_03585	A0A0D2A0L0	A0A0D2CLH8	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.702
PV07_00762	PV07_04839	A0A0D2A0L0	A0A0D2CD36	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.761
PV07_00762	PV07_07393	A0A0D2A0L0	A0A0D2CB70	PX domain-containing protein.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.555
PV07_00762	PV07_10066	A0A0D2A0L0	A0A0D2AHH3	PX domain-containing protein.	Sorting nexin-3.	0.513
PV07_00762	PV07_10764	A0A0D2A0L0	A0A0D2C1B8	PX domain-containing protein.	Uncharacterized protein.	0.566
PV07_00762	PV07_11101	A0A0D2A0L0	A0A0D2BUW0	PX domain-containing protein.	PX domain-containing protein.	0.509
PV07_00762	PV07_11214	A0A0D2A0L0	A0A0D2CHD5	PX domain-containing protein.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.566
PV07_00762	PV07_11433	A0A0D2A0L0	A0A0D2CI12	PX domain-containing protein.	PX domain-containing protein.	0.536
PV07_01616	PV07_02987	A0A0D2DGI1	A0A0D2CMP4	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	Uncharacterized protein.	0.662
PV07_01616	PV07_03585	A0A0D2DGI1	A0A0D2CLH8	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.666
PV07_01616	PV07_04839	A0A0D2DGI1	A0A0D2CD36	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.664
PV07_01616	PV07_09201	A0A0D2DGI1	A0A0D2C4J4	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	GH16 domain-containing protein.	0.635
PV07_01616	PV07_10764	A0A0D2DGI1	A0A0D2C1B8	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	Uncharacterized protein.	0.566
PV07_01616	PV07_11214	A0A0D2DGI1	A0A0D2CHD5	Glycosidase; Belongs to the glycosyl hydrolase 16 family.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.555
PV07_02080	PV07_00762	A0A0D2BCZ1	A0A0D2A0L0	PX domain-containing protein.	PX domain-containing protein.	0.445
PV07_02080	PV07_02987	A0A0D2BCZ1	A0A0D2CMP4	PX domain-containing protein.	Uncharacterized protein.	0.764
PV07_02080	PV07_03585	A0A0D2BCZ1	A0A0D2CLH8	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.774
PV07_02080	PV07_04839	A0A0D2BCZ1	A0A0D2CD36	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.788