(5 nodes) Retromer complex network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_11101	PX domain-containing protein. (580 aa)
	PV07_07393	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family. (615 aa)
	PV07_04839	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (869 aa)
	PV07_03585	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (200 aa)
	PV07_02987	Uncharacterized protein. (322 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_02987	PV07_03585	A0A0D2CMP4	A0A0D2CLH8	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.999
PV07_02987	PV07_04839	A0A0D2CMP4	A0A0D2CD36	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
PV07_02987	PV07_07393	A0A0D2CMP4	A0A0D2CB70	Uncharacterized protein.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.934
PV07_02987	PV07_11101	A0A0D2CMP4	A0A0D2BUW0	Uncharacterized protein.	PX domain-containing protein.	0.980
PV07_03585	PV07_02987	A0A0D2CLH8	A0A0D2CMP4	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Uncharacterized protein.	0.999
PV07_03585	PV07_04839	A0A0D2CLH8	A0A0D2CD36	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
PV07_03585	PV07_07393	A0A0D2CLH8	A0A0D2CB70	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.980
PV07_03585	PV07_11101	A0A0D2CLH8	A0A0D2BUW0	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	PX domain-containing protein.	0.981
PV07_04839	PV07_02987	A0A0D2CD36	A0A0D2CMP4	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.999
PV07_04839	PV07_03585	A0A0D2CD36	A0A0D2CLH8	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.999
PV07_04839	PV07_07393	A0A0D2CD36	A0A0D2CB70	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.954
PV07_04839	PV07_11101	A0A0D2CD36	A0A0D2BUW0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.981
PV07_07393	PV07_02987	A0A0D2CB70	A0A0D2CMP4	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	Uncharacterized protein.	0.934
PV07_07393	PV07_03585	A0A0D2CB70	A0A0D2CLH8	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.980
PV07_07393	PV07_04839	A0A0D2CB70	A0A0D2CD36	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.954
PV07_07393	PV07_11101	A0A0D2CB70	A0A0D2BUW0	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	PX domain-containing protein.	0.959
PV07_11101	PV07_02987	A0A0D2BUW0	A0A0D2CMP4	PX domain-containing protein.	Uncharacterized protein.	0.980
PV07_11101	PV07_03585	A0A0D2BUW0	A0A0D2CLH8	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.981
PV07_11101	PV07_04839	A0A0D2BUW0	A0A0D2CD36	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.981
PV07_11101	PV07_07393	A0A0D2BUW0	A0A0D2CB70	PX domain-containing protein.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.959