20 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_01645	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
	PV07_06898	Fcf2 domain-containing protein. (231 aa)
	PV07_04566	18S rRNA biogenesis protein RCL1. (407 aa)
	PV07_09425	Pre-rRNA-processing protein PNO1. (267 aa)
	PV07_09362	WD_REPEATS_REGION domain-containing protein. (603 aa)
	PV07_00407	Uncharacterized protein. (1797 aa)
	PV07_11888	Nop domain-containing protein. (653 aa)
	PV07_05522	WD_REPEATS_REGION domain-containing protein. (899 aa)
	PV07_09123	WD_REPEATS_REGION domain-containing protein. (559 aa)
	PV07_12481	CBF domain-containing protein. (293 aa)
	PV07_03216	Uncharacterized protein. (440 aa)
	PV07_09491	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (242 aa)
	PV07_09408	Uncharacterized protein. (274 aa)
	PV07_04586	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
	PV07_04142	Uncharacterized protein. (399 aa)
	PV07_03970	WD_REPEATS_REGION domain-containing protein. (967 aa)
	PV07_09264	Uncharacterized protein. (937 aa)
	PV07_01426	Uncharacterized protein. (763 aa)
	PV07_03482	Kri1_C domain-containing protein. (609 aa)
	PV07_05873	PINc domain-containing protein. (194 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00407	PV07_01426	A0A0D2CQV0	A0A0D2DG11	Uncharacterized protein.	Uncharacterized protein.	0.904
PV07_00407	PV07_03482	A0A0D2CQV0	A0A0D2D840	Uncharacterized protein.	Kri1_C domain-containing protein.	0.717
PV07_00407	PV07_03970	A0A0D2CQV0	A0A0D1ZW68	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
PV07_00407	PV07_04142	A0A0D2CQV0	A0A0D1ZWT4	Uncharacterized protein.	Uncharacterized protein.	0.997
PV07_00407	PV07_04566	A0A0D2CQV0	A0A0D2CT40	Uncharacterized protein.	18S rRNA biogenesis protein RCL1.	0.972
PV07_00407	PV07_04586	A0A0D2CQV0	A0A0D1ZYC8	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
PV07_00407	PV07_05522	A0A0D2CQV0	A0A0D2CF49	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
PV07_00407	PV07_05873	A0A0D2CQV0	A0A0D2D318	Uncharacterized protein.	PINc domain-containing protein.	0.983
PV07_00407	PV07_06898	A0A0D2CQV0	A0A0D2CU40	Uncharacterized protein.	Fcf2 domain-containing protein.	0.947
PV07_00407	PV07_09123	A0A0D2CQV0	A0A0D2C697	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
PV07_00407	PV07_09264	A0A0D2CQV0	A0A0D1ZEJ2	Uncharacterized protein.	Uncharacterized protein.	0.997
PV07_00407	PV07_09362	A0A0D2CQV0	A0A0D2CRL0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.991
PV07_00407	PV07_09408	A0A0D2CQV0	A0A0D2AMH8	Uncharacterized protein.	Uncharacterized protein.	0.400
PV07_00407	PV07_09425	A0A0D2CQV0	A0A0D2CRU8	Uncharacterized protein.	Pre-rRNA-processing protein PNO1.	0.965
PV07_00407	PV07_09491	A0A0D2CQV0	A0A0D2AMS0	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.776
PV07_00407	PV07_11888	A0A0D2CQV0	A0A0D2CJG6	Uncharacterized protein.	Nop domain-containing protein.	0.996
PV07_00407	PV07_12481	A0A0D2CQV0	A0A0D2BUS0	Uncharacterized protein.	CBF domain-containing protein.	0.999
PV07_01426	PV07_00407	A0A0D2DG11	A0A0D2CQV0	Uncharacterized protein.	Uncharacterized protein.	0.904
PV07_01426	PV07_03482	A0A0D2DG11	A0A0D2D840	Uncharacterized protein.	Kri1_C domain-containing protein.	0.707
PV07_01426	PV07_03970	A0A0D2DG11	A0A0D1ZW68	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.854