(18 nodes) Response to pheromone triggering conjugation with cellular fusion network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_06970	Uncharacterized protein. (365 aa)
	PV07_07839	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (357 aa)
	PV07_04263	Uncharacterized protein. (595 aa)
	PV07_00042	PPM-type phosphatase domain-containing protein. (483 aa)
	PV07_02167	Calcineurin subunit B. (201 aa)
	PV07_10141	Non-specific serine/threonine protein kinase. (872 aa)
	PV07_08729	Protein kinase domain-containing protein. (206 aa)
	PV07_01953	Uncharacterized protein. (1143 aa)
	PV07_12191	Guanine nucleotide-binding protein subunit alpha. (353 aa)
	PV07_10794	FHA domain-containing protein. (733 aa)
	PV07_07134	Non-specific serine/threonine protein kinase. (889 aa)
	PV07_08172	Protein kinase domain-containing protein. (540 aa)
	PV07_05695	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1365 aa)
	PV07_06484	Uncharacterized protein. (927 aa)
	PV07_00604	Guanine nucleotide-binding protein subunit beta. (353 aa)
	PV07_01038	Uncharacterized protein. (556 aa)
	PV07_07743	Opy2 domain-containing protein. (452 aa)
	PV07_00359	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1597 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00042	PV07_06484	A0A0D1ZYI1	A0A0D2CST3	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.645
PV07_00042	PV07_07839	A0A0D1ZYI1	A0A0D1ZJJ0	PPM-type phosphatase domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.863
PV07_00042	PV07_08172	A0A0D1ZYI1	A0A0D2CBV5	PPM-type phosphatase domain-containing protein.	Protein kinase domain-containing protein.	0.543
PV07_00359	PV07_05695	A0A0D2DCW4	A0A0D2CID1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.443
PV07_00604	PV07_01038	A0A0D2CV56	A0A0D2CWH7	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.592
PV07_00604	PV07_01953	A0A0D2CV56	A0A0D2BCH8	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.937
PV07_00604	PV07_04263	A0A0D2CV56	A0A0D1ZX48	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.955
PV07_00604	PV07_06484	A0A0D2CV56	A0A0D2CST3	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.688
PV07_00604	PV07_06970	A0A0D2CV56	A0A0D1ZGZ1	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.559
PV07_00604	PV07_07134	A0A0D2CV56	A0A0D2C8G7	Guanine nucleotide-binding protein subunit beta.	Non-specific serine/threonine protein kinase.	0.906
PV07_00604	PV07_07839	A0A0D2CV56	A0A0D1ZJJ0	Guanine nucleotide-binding protein subunit beta.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.899
PV07_00604	PV07_08172	A0A0D2CV56	A0A0D2CBV5	Guanine nucleotide-binding protein subunit beta.	Protein kinase domain-containing protein.	0.607
PV07_00604	PV07_08729	A0A0D2CV56	A0A0D2AKS1	Guanine nucleotide-binding protein subunit beta.	Protein kinase domain-containing protein.	0.870
PV07_00604	PV07_10141	A0A0D2CV56	A0A0D2AHQ9	Guanine nucleotide-binding protein subunit beta.	Non-specific serine/threonine protein kinase.	0.870
PV07_00604	PV07_12191	A0A0D2CV56	A0A0D2BV37	Guanine nucleotide-binding protein subunit beta.	Guanine nucleotide-binding protein subunit alpha.	0.955
PV07_01038	PV07_00604	A0A0D2CWH7	A0A0D2CV56	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta.	0.592
PV07_01038	PV07_06484	A0A0D2CWH7	A0A0D2CST3	Uncharacterized protein.	Uncharacterized protein.	0.990
PV07_01038	PV07_07743	A0A0D2CWH7	A0A0D2CWS9	Uncharacterized protein.	Opy2 domain-containing protein.	0.939
PV07_01038	PV07_07839	A0A0D2CWH7	A0A0D1ZJJ0	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.670
PV07_01038	PV07_08172	A0A0D2CWH7	A0A0D2CBV5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.563