20 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_07441	BTB domain-containing protein. (317 aa)
	PV07_05443	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (432 aa)
	PV07_02978	Condensation domain-containing protein. (166 aa)
	PV07_04200	Carrier domain-containing protein. (2381 aa)
	PV07_01297	F-box domain-containing protein. (1228 aa)
	PV07_01552	Elongation of fatty acids protein. (833 aa)
	PV07_11274	Uncharacterized protein. (225 aa)
	PV07_10554	Uncharacterized protein. (245 aa)
	PV07_02865	2-deoxy-D-gluconate 3-dehydrogenase. (263 aa)
	PV07_03817	PKS_AT domain-containing protein; Belongs to the fungal fatty acid synthetase subunit beta family. (2088 aa)
	PV07_10015	Carrier domain-containing protein. (2081 aa)
	PV07_12515	Uncharacterized protein. (246 aa)
	PV07_12338	Uncharacterized protein. (1765 aa)
	PV07_05208	BTB domain-containing protein. (288 aa)
	PV07_05236	Elongation of fatty acids protein. (346 aa)
	PV07_05308	Uncharacterized protein. (2176 aa)
	PV07_06164	Uncharacterized protein. (350 aa)
	PV07_03818	Fatty acid synthase subunit alpha; Belongs to the thiolase-like superfamily. Fungal fatty acid synthetase subunit alpha family. (1865 aa)
	PV07_02977	Carrier domain-containing protein. (2793 aa)
	PV07_03154	PKS_AT domain-containing protein. (387 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_01297	PV07_01552	A0A0D2A2L9	A0A0D2A3C8	F-box domain-containing protein.	Elongation of fatty acids protein.	0.743
PV07_01297	PV07_05443	A0A0D2A2L9	A0A0D1ZNV1	F-box domain-containing protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.686
PV07_01552	PV07_01297	A0A0D2A3C8	A0A0D2A2L9	Elongation of fatty acids protein.	F-box domain-containing protein.	0.743
PV07_01552	PV07_02977	A0A0D2A3C8	A0A0D2CMN3	Elongation of fatty acids protein.	Carrier domain-containing protein.	0.434
PV07_01552	PV07_02978	A0A0D2A3C8	A0A0D1ZT95	Elongation of fatty acids protein.	Condensation domain-containing protein.	0.434
PV07_01552	PV07_04200	A0A0D2A3C8	A0A0D1ZWY1	Elongation of fatty acids protein.	Carrier domain-containing protein.	0.434
PV07_01552	PV07_05208	A0A0D2A3C8	A0A0D2CGQ9	Elongation of fatty acids protein.	BTB domain-containing protein.	0.434
PV07_01552	PV07_05236	A0A0D2A3C8	A0A0D2CGV0	Elongation of fatty acids protein.	Elongation of fatty acids protein.	0.743
PV07_01552	PV07_05308	A0A0D2A3C8	A0A0D2CH56	Elongation of fatty acids protein.	Uncharacterized protein.	0.434
PV07_01552	PV07_06164	A0A0D2A3C8	A0A0D2CJZ9	Elongation of fatty acids protein.	Uncharacterized protein.	0.434
PV07_01552	PV07_07441	A0A0D2A3C8	A0A0D1ZIE1	Elongation of fatty acids protein.	BTB domain-containing protein.	0.434
PV07_01552	PV07_10015	A0A0D2A3C8	A0A0D2BYR6	Elongation of fatty acids protein.	Carrier domain-containing protein.	0.434
PV07_01552	PV07_12338	A0A0D2A3C8	A0A0D2CFZ5	Elongation of fatty acids protein.	Uncharacterized protein.	0.434
PV07_02865	PV07_02977	A0A0D2B0S1	A0A0D2CMN3	2-deoxy-D-gluconate 3-dehydrogenase.	Carrier domain-containing protein.	0.401
PV07_02865	PV07_02978	A0A0D2B0S1	A0A0D1ZT95	2-deoxy-D-gluconate 3-dehydrogenase.	Condensation domain-containing protein.	0.401
PV07_02865	PV07_03154	A0A0D2B0S1	A0A0D2D756	2-deoxy-D-gluconate 3-dehydrogenase.	PKS_AT domain-containing protein.	0.874
PV07_02865	PV07_03817	A0A0D2B0S1	A0A0D2B3R7	2-deoxy-D-gluconate 3-dehydrogenase.	PKS_AT domain-containing protein; Belongs to the fungal fatty acid synthetase subunit beta family.	0.682
PV07_02865	PV07_03818	A0A0D2B0S1	A0A0D2CLZ4	2-deoxy-D-gluconate 3-dehydrogenase.	Fatty acid synthase subunit alpha; Belongs to the thiolase-like superfamily. Fungal fatty acid synthetase subunit alpha family.	0.682
PV07_02865	PV07_04200	A0A0D2B0S1	A0A0D1ZWY1	2-deoxy-D-gluconate 3-dehydrogenase.	Carrier domain-containing protein.	0.401
PV07_02865	PV07_05208	A0A0D2B0S1	A0A0D2CGQ9	2-deoxy-D-gluconate 3-dehydrogenase.	BTB domain-containing protein.	0.401